Locus 4693

Sequence ID 2R_DroMel_CAF1
Location 15,364,644 – 15,364,739
Length 95
Max. P 0.668321
window7555

overview

Window 5

Location 15,364,644 – 15,364,739
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 80.22
Mean single sequence MFE -17.12
Consensus MFE -8.51
Energy contribution -9.04
Covariance contribution 0.53
Combinations/Pair 1.09
Mean z-score -2.34
Structure conservation index 0.50
SVM decision value 0.29
SVM RNA-class probability 0.668321
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15364644 95 - 20766785
AAUCAAUUGCUGAGAACUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCACAUAACAAAUGGCCCAUAAUCGGGC--------CACAGCG-AAAU
......((((((....((((.....)))).......................................((((((......))))--------)))))))-)... ( -24.10)
>DroPse_CAF1 198420 92 - 1
AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCCAAACAAAUGGCCCAUAAGCGAGC-----------AGCA-AAAU
......((((((.....(((........(((...(((........)))...)))....((((......))))......)))..)-----------))))-)... ( -18.20)
>DroGri_CAF1 193552 82 - 1
AAUCAAUUGUUGAGAAGUGCAAUUAGCAGCAAAAGAUAAAAAUAAAUUCACA-----AACAAAACAAAUGGUCCAAC----CAC--------CCAACAA-----
.(((..((((((..((......))..))))))..)))...............-----...........(((.....)----)).--------.......----- (  -9.10)
>DroWil_CAF1 340852 87 - 1
AAUCAAUUGCUGAGAAGUGCAAUUAGCAGGAAAAGAUAAAAAUAAAUUAAAGGCCUCCGCAAAACAAAUGGCCCAUAAGCG----------------CA-AAAC
.(((..(((((((.........))))))).....)))..............((((..............))))........----------------..-.... ( -12.04)
>DroAna_CAF1 143555 104 - 1
AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCGAAGAUAAAAAUAAAUUAAAGGCCUCCGCAUAACAAAUGGCCCAUAAGCGGACAGCAACUGCACAGCACAAAU
.......(((((.(.(((((........(((...(((........)))...))).(((((..................)))))..)).))).).)))))..... ( -21.07)
>DroPer_CAF1 157323 92 - 1
AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCCAAACAAAUGGCCCAUAAGCGAGC-----------AGCA-AAAU
......((((((.....(((........(((...(((........)))...)))....((((......))))......)))..)-----------))))-)... ( -18.20)
>consensus
AAUCAAUUGCUGAGAAGUGCAAUUAGCAGCCAAAGAUAAAAAUAAAUUAAAGGCCUCCGCAAAACAAAUGGCCCAUAAGCGAGC___________AGCA_AAAU
......(((((((.........)))))))......................((((..............))))............................... ( -8.51 =  -9.04 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:27:00 2006