| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,363,902 – 15,364,012 |
| Length | 110 |
| Max. P | 0.716125 |
| Location | 15,363,902 – 15,364,012 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -19.22 |
| Energy contribution | -20.30 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15363902 110 - 20766785 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGCCACUCGCACACAUAUGCUGCUUUCCUUUCAGAA-A-- ......(((((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......)))))))))..........-.-- ( -29.60) >DroPse_CAF1 197563 116 - 1 AAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUCGACAGUCCGACAGUCGCACACAUAUGCUGCCUAGCACUCCACU---- ......((.((((((...............((((((((.((((.....)))).))))))))..((((((.((((......)))).)))).)).....))))))))...........---- ( -31.70) >DroWil_CAF1 339310 106 - 1 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGCCA-------GUUCGGCACUCGCACACACAUGCUGCAUGG----AAGAG-A-- .........((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......))))))....----.....-.-- ( -27.60) >DroMoj_CAF1 233083 106 - 1 AAGUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGACAGGCACACACACACACA------CACGCGCGG-ACU ..................(((..........(((((((.((((.....)))).)))))))((.(((((..-------..)))))..)).............------.....))).-... ( -19.60) >DroAna_CAF1 142709 111 - 1 AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA-------GUUCGCCACUCGCACACAUAUGCUGCCUGCCACUCCUUACU-- ......((.((((((................(((((((.((((.....)))).)))))))(((((.(((.-------....)))))).)).......)))))))).............-- ( -27.80) >DroPer_CAF1 156466 116 - 1 AAAUAAAGAGCAGCAGAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCAGUCGACAGUCCGACAGUCGCACACAUAUGCUGCCUAGCACUCCACU---- ......((.((((((...............((((((((.((((.....)))).))))))))..((((((.((((......)))).)))).)).....))))))))...........---- ( -31.70) >consensus AAAUAAAGAGCAGCAAAACGCAAAUAUCAUCGAAUGGAAUAUAAUUUAUGUGCUCCAUUUGCAGUCGGCA_______GUUCGACACUCGCACACAUAUGCUGCCUAGCACUCCAAA_A__ .........((((((...............((((((((.((((.....)))).))))))))..((((((........).))))).............))))))................. (-19.22 = -20.30 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:59 2006