Locus 469

Sequence ID 2R_DroMel_CAF1
Location 2,659,583 – 2,659,675
Length 92
Max. P 0.957970
window893

overview

Window 3

Location 2,659,583 – 2,659,675
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 75.49
Mean single sequence MFE -25.93
Consensus MFE -16.07
Energy contribution -17.10
Covariance contribution 1.03
Combinations/Pair 1.33
Mean z-score -1.98
Structure conservation index 0.62
SVM decision value 1.48
SVM RNA-class probability 0.957970
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2659583 92 + 20766785
UA-AUGCCCAGCUGAGA-ACUAAUCCU--UUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUAUCCGCUCCUGAAGGUCUGGGUAACACGAU
..-.(((((((.(((((-(.......)--))))).....----............((((.(((.((((....)))).))).)))).)))))))....... ( -27.40)
>DroSec_CAF1 92782 94 + 1
UA-AUGCCCAGCUGAGA-ACUAAUCCAAAUUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGCAAACACCAU
..-.((((..((.((((-(................))))----)............(((.((((((((....)))))))).)))))..))))........ ( -27.19)
>DroSim_CAF1 90854 94 + 1
UA-AUGCCCAGCUGAGA-ACUAAUCCAAAUUUCAAUUCU----CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGGAAACACCAU
..-...(((((..((((-(................))))----)...........((((.((((((((....)))))))).)))).)))))......... ( -28.69)
>DroEre_CAF1 91430 93 + 1
UAGAAGCCCAGCUGAAU-ACUAAUCCA--CUUCAAUUCU----UUCAGUCAUAUUUCUUGGGGUGUGGAUCUCCGCACCUGGGGGCCUGGGAAACACGAU
......((((((((((.-.........--..........----))))).......((((.((((((((....)))))))).)))).)))))......... ( -28.45)
>DroYak_CAF1 88452 96 + 1
CA-AAGCCCAACUGAAA-ACUAAUCCC--AUUCAAUUUUCAAAUAUAGUAAUAUUUCUUGGGGUGUGGAUCUCGGCACCUGGAGGCCUGGGCAACACGAU
..-..(((((..(((((-(........--......))))))..............((((.((((((.(....).)))))).))))..)))))........ ( -25.84)
>DroAna_CAF1 95200 88 + 1
UA-ACUC-CAGAAGAAUCUCUAACCU----UU--CUUUC----CAAAGUUCUGUUUCUAGGAGCCCUGAUCUCCGCCCCCGUUGGGCAUGGCAACACGAU
..-(((.-..((((((..........----))--)))).----...)))((((((.(((((((.......))))((((.....)))).))).)))).)). ( -18.00)
>consensus
UA_AUGCCCAGCUGAAA_ACUAAUCCA__UUUCAAUUCU____CCUAGUCAUUCUUCUUGGGGUGUGGAUCUCCGCACCUGGAGGUCUGGGAAACACGAU
......(((((..((((.((((.......................))))...))))(((.((((((((....)))))))).)))..)))))......... (-16.07 = -17.10 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:22 2006