Locus 4682

Sequence ID 2R_DroMel_CAF1
Location 15,323,242 – 15,323,332
Length 90
Max. P 0.977314
window7534

overview

Window 4

Location 15,323,242 – 15,323,332
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 75.49
Mean single sequence MFE -17.80
Consensus MFE -15.22
Energy contribution -15.22
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.85
SVM decision value 1.79
SVM RNA-class probability 0.977314
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15323242 90 - 20766785
CCCUGUUCACCGU-------CCACUGUCCACUCGGGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACCC----AC--AC--
.............-------....(((((((....)))))))(((((...(((...)))((((((........)))))).)))))........----..--..-- ( -15.80)
>DroPse_CAF1 154786 82 - 1
CCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUCUCAAUUUAAUUAUAGUAAUACACACACACUCACACAC--
....---------------------((((((....))))))(((((.(((((((....)))))))..)))))...............................-- ( -15.00)
>DroWil_CAF1 257267 96 - 1
--------CCCAGGCACUGGCC-UUGUCCACUCGUGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACAACCAGAGAAAUGA
--------.(((((((...((.-((((((((....))))))))..))...)))))))..((((((........)))))).......................... ( -26.00)
>DroYak_CAF1 119814 101 - 1
CCCUGUUCACCGUCCACAGUCCACUGUCCACUCGGGUGGACAAUUGCAAUUGCUUGGCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACCCUCACACUC--AC--
...((((((((((..((((....))))..))...))))))))(((((...(((...)))((((((........)))))).)))))..............--..-- ( -18.90)
>DroAna_CAF1 102995 80 - 1
UCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUGGCCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACUCACACUC--AC--
....---------------------((((((....))))))(((((.(((((((....)))))))..)))))...........................--..-- ( -16.10)
>DroPer_CAF1 113756 74 - 1
CCCU---------------------GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUCUCAAUUUAAUUAUAGUAAUACACACAC--------AC--
....---------------------((((((....))))))(((((.(((((((....)))))))..))))).....................--------..-- ( -15.00)
>consensus
CCCU_____________________GUCCACUCGGGUGGACAAUUGCAAUUGCUUGCCAGUAAUUUUCAAUUUAAUUAUAGUAAUACACACACACACAC__AC__
.........................((((((....))))))(((((.(((((((....)))))))..)))))................................. (-15.22 = -15.22 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:39 2006