Locus 4678

Sequence ID 2R_DroMel_CAF1
Location 15,312,583 – 15,312,675
Length 92
Max. P 0.544749
window7523

overview

Window 3

Location 15,312,583 – 15,312,675
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 79.69
Mean single sequence MFE -21.86
Consensus MFE -13.88
Energy contribution -14.77
Covariance contribution 0.89
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.63
SVM decision value 0.02
SVM RNA-class probability 0.544749
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15312583 92 - 20766785
-----UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA
-----.........(.(((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---....))))--------).). ( -24.20)
>DroSim_CAF1 95565 92 - 1
-----UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA
-----.........(.(((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---....))))--------).). ( -24.20)
>DroEre_CAF1 104658 92 - 1
-----UUGCCCAUCGCCUGGAAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCA--------GCCA
-----.........(.((((..(((((......)))))(((((((......)))))))...........(((((....)))))..---.....)))--------).). ( -20.70)
>DroYak_CAF1 108437 100 - 1
-----UUGGCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA---CCCACCCACCCAGCCAACCA
-----(((((.......((((.(((((......)))))(((((((......)))))))...........(((((....)))))..---))))........)))))... ( -26.06)
>DroAna_CAF1 91351 81 - 1
-----UUGUCCAUUGCCUCGGAGAAAAUUAAACUUUUCGCUCGGCU-----------CACAAAAACAUUUUAUGCACUUAUGACG---CCCAGUCA--------ACCA
-----((((.....(((..((.(((((......))))).)).))).-----------.))))..................((((.---....))))--------.... ( -11.90)
>DroPer_CAF1 102702 108 - 1
AACACUCGCCUUUGGCCUCGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUACGGAGUGGAAAAACGUUUGCUGCACUUAUGACGCCGCCCGCUCAGCCGCCCGCUCA
.......((...((((..(((........(((((((((((((((........)))))))))))...))))((.((.........)).)))))....))))...))... ( -24.10)
>consensus
_____UUGCCCAUCGCCUGGGAGAAAAUUAAACUUUUCGCUUCGCUUUUGUGCGGGGCACAAAAACAUUUCAUGCACUUAUGACA___CCCACCCA________GCCA
..............((.((((((((((......)))))(((((((......))))))).........))))).))................................. (-13.88 = -14.77 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:29 2006