Locus 4670

Sequence ID 2R_DroMel_CAF1
Location 15,243,723 – 15,243,818
Length 95
Max. P 0.690991
window7510

overview

Window 0

Location 15,243,723 – 15,243,818
Length 95
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 82.93
Mean single sequence MFE -31.37
Consensus MFE -25.14
Energy contribution -24.75
Covariance contribution -0.39
Combinations/Pair 1.10
Mean z-score -1.67
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.690991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15243723 95 - 20766785
CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAG---CUGUAUUAGAUUAUAGCCAAUAUAU
(((((((((...((..(((((((...)))))))..)).)))).....(((.....)))....)))))(.(---(((((......)))))))....... ( -31.80)
>DroGri_CAF1 76373 93 - 1
CCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAGAUGUUUGGUCCGCA----GCCAAAUUC-
.....(((((.......))))).......((.((.(..(((((((((....(((.((.....)))))..)))))))))..).))----.))......- ( -29.80)
>DroEre_CAF1 67376 94 - 1
CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAGGUUGACUUUGAGUU----CCCAAAAUGC
.......(((((((.((....((((((((((((....))).(((......)))...........)))))))))....)).))))----)))....... ( -33.80)
>DroWil_CAF1 167822 94 - 1
CCAUACCGGGAAUCGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGACUUGGCUGUUGCGUG----GUCAAAAUGC
(((((((((...((..((((((.....))))))..)).)))).....(((.....)))....)))))((((..((....))..)----)))....... ( -31.60)
>DroYak_CAF1 70728 94 - 1
CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGGUAUCCUAACCACUAGACAAUAUGGGAGGUGAUUUCUGUGUU----UCCAAAACAA
.(((((((((.......)))))(((((((((((....))).(((......)))...........))))))))......))))..----.......... ( -32.60)
>DroAna_CAF1 60804 89 - 1
CCAUACCGGGAAUUGAACCCGGGCCUUCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAUGUGAUGUUUGCGCA----GGCAA-----
.....(((((.......)))))((((..(((((....)))((((((((...(((.((.....)))))...).))))))).)).)----)))..----- ( -28.60)
>consensus
CCAUACCGGGAAUUGAACCCGGGCCUCCCGGGUGAGAGCCGGAUAUCCUAACCACUAGACAAUAUGGGAGGUGAUUUUUGCGUU____GCCAAAAUA_
(((((((((...((..(((((((...)))))))..)).)))).....(((.....)))....)))))............................... (-25.14 = -24.75 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:16 2006