Locus 467

Sequence ID 2R_DroMel_CAF1
Location 2,656,605 – 2,656,712
Length 107
Max. P 0.517516
window891

overview

Window 1

Location 2,656,605 – 2,656,712
Length 107
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 78.83
Mean single sequence MFE -36.60
Consensus MFE -22.61
Energy contribution -22.62
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.69
Structure conservation index 0.62
SVM decision value -0.03
SVM RNA-class probability 0.517516
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2656605 107 - 20766785
GCAGGAUGCCACGCAGUAUGCAGUGGG---GAAUGGGGUUCGUCUUAGGACUUCCAUCUAAAUGGUGCGGGAGUCAAAUGAGUGAGAGCUCUUUGCUAGCCUGGCACUCG
.((((...((((((.....)).))))(---(...(((((((..((((.((((((((((.....)))..)))))))...))))...)))))))...))..))))....... ( -37.50)
>DroSec_CAF1 89842 102 - 1
GGAG-----CACGCAGUAUGCAGUGGAUAAGAAUGGGGUUCGUCAUAGAACUUCCAUCUAAAUGGUGCGGGAGUCAAAUGAGCGAAAGCUCUUGGCUAAACUGGCAC---
....-----(((((.....)).)))....(((.((((((((......)))).))))))).....((((.((((((((..((((....))))))))))...)).))))--- ( -34.20)
>DroSim_CAF1 87762 102 - 1
GCAG-----CACGCAGUAUGCAGUGGAUAAGAAUGGGGUUCGUCAUAGAACUUCCAUCUAAGUGGUGCGGGAGUCAAAUGAGUGAGAGCUCUUUGCUAGCCUGGCAC---
(((.-----(((((.....))........(((.((((((((......)))).)))))))..))).)))((.((.((((.((((....))))))))))..))......--- ( -33.00)
>DroEre_CAF1 88147 97 - 1
GCUG-----UGCCCACUAUGCAGCUCG---GAA-GGGGUUCCUUAUGGGACUCCGAUCGCGAUGGUGCGGGAGUCGGAUGAGUGAGAGCUCCUUUCUAGCC-GGCAC---
((((-----(((.......)))(((.(---(((-((((((((((((..((((((...((((....))))))))))..)))))...))))))))))).))))-)))..--- ( -41.70)
>consensus
GCAG_____CACGCAGUAUGCAGUGGA___GAAUGGGGUUCGUCAUAGAACUUCCAUCUAAAUGGUGCGGGAGUCAAAUGAGUGAGAGCUCUUUGCUAGCCUGGCAC___
.........(((((.....)).))).........(((((((......)))))))..........(((((((........((((....))))........))).))))... (-22.61 = -22.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:20 2006