Locus 4666

Sequence ID 2R_DroMel_CAF1
Location 15,241,550 – 15,241,665
Length 115
Max. P 0.658394
window7503

overview

Window 3

Location 15,241,550 – 15,241,665
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.49
Mean single sequence MFE -45.17
Consensus MFE -34.79
Energy contribution -35.60
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -2.14
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.658394
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15241550 115 - 20766785
AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU--GGGUGGGUG---UUGUUCGC
........((((((((((.........((...(((......)))..))((((((((((((((((..(((........)))..)))))))..)))))))--)))))))))---)))..... ( -44.70)
>DroSim_CAF1 61218 117 - 1
AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGGUGGGGUGGGUG---UUGUUCGC
........((((((((((((..(((.(((..((((.((....)).))))..))).(((((((((..(((........)))..)))))))))....)))..)))))))))---)))..... ( -47.50)
>DroEre_CAF1 65169 116 - 1
AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUGGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU--GGGUGGGUGG--GUGUUCGG
......((.(((((((((.(..((.......((((.((....)).))))((((((((((.((((..(((........)))..)))).))..)))))))--)))..)))))--))))).)) ( -43.20)
>DroYak_CAF1 68478 118 - 1
AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUGGGCUCUCGGCUGUGCUUUUGUAAGCUGAAGCCCCAUGU--CGGUGGAUGGGAGUGUUCGG
...((((((..((((((((..((...(((..((((.((....)).))))..))).....(((((.((((((.(((....))))))))))))))...))--.)))))))).)))))).... ( -45.30)
>consensus
AUUACACUUAACAUCCACUUUGCUAAACGAAGCGCAUGAAAGCGGGCGCCACGUGGUUUCGGCUCUCGACUGUGCUUUUGUAAGCCGAAGCGCCAUGU__GGGUGGGUG___GUGUUCGC
...((((....((((((((..(((......)))(((((..((((((.(((..........))).)))).))(((((((.(....).))))))))))))...))))))))...)))).... (-34.79 = -35.60 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:08 2006