Locus 4664

Sequence ID 2R_DroMel_CAF1
Location 15,240,763 – 15,240,860
Length 97
Max. P 0.924549
window7499 window7500

overview

Window 9

Location 15,240,763 – 15,240,860
Length 97
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 77.64
Mean single sequence MFE -35.83
Consensus MFE -30.02
Energy contribution -29.13
Covariance contribution -0.89
Combinations/Pair 1.16
Mean z-score -1.09
Structure conservation index 0.84
SVM decision value 0.54
SVM RNA-class probability 0.775520
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15240763 97 + 20766785
UAUAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUAU--------AGAGUAUUUCG---CAA-GUUC--------GA-
....(((((((((((.((((........)))).))).........(((((.((.....))..)))))))))))))..--------.........(.---...-)...--------..- ( -29.50)
>DroVir_CAF1 93529 110 + 1
AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUAU-GGAGAGUACUGA-GGUGG---AAAGCUGUGAUUU---CCA
....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).(-(((((.(((..(-(.(..---..).))))).)))---))) ( -37.30)
>DroPse_CAF1 109070 103 + 1
AACUAGCAGAGUGGCGCAGCGGAAGCGCGCUGGGCCCAUAACCCAGAGGUCCGGGGAUCGAAACCUUGUUCUGCUAAUU--GACUGGUGUGGGGUG---CAA-UUCC--------CA-
...((((((((.(((((.((....)))))))((((((........).)))))(((........)))..))))))))...--........(((((..---...-.)))--------))- ( -38.40)
>DroGri_CAF1 75892 111 + 1
AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA-------AUUGAGUAGCUUGUGGGUGAUUGUAUACCGCACAA
....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).-------...........((((((((......)))).)))). ( -36.50)
>DroMoj_CAF1 91991 107 + 1
AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA-----GAAUACAGUCGGUUG---GAAAAUGAGUUUC---CAA
....(((((((((((.((((........)))).))).........(((((.((.....))..))))))))))))).-----............(((---((((.....))))---))) ( -34.10)
>DroPer_CAF1 67118 104 + 1
AACUAGCAGAGUGGCGCAGCGGAAGCGCGCUGGGCCCAUAACCCAGAGGUCCGGGGAUCGAAACCUUGUUCUGCUAAUU--GACUGGUGUGGGGUG---CAA-UUCC--------CAA
...((((((((.(((((.((....)))))))((((((........).)))))(((........)))..))))))))...--........(((((..---...-.)))--------)). ( -39.20)
>consensus
AACAAGCAGAGUGGCGCAGUGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCCGAGGAUCGAAACCUUGCUCUGCUA_____GAAUAGAGUAGGUUG___CAA_UUGC________CAA
....(((((((((((((.((....)))))))((((((........).)))))((((.......))))))))))))........................................... (-30.02 = -29.13 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 15,240,763 – 15,240,860
Length 97
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 77.64
Mean single sequence MFE -33.42
Consensus MFE -25.30
Energy contribution -25.63
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 1.16
SVM RNA-class probability 0.924549
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15240763 97 - 20766785
-UC--------GAAC-UUG---CGAAAUACUCU--------AUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUAUA
-((--------(...-...---)))........--------..(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... ( -27.90)
>DroVir_CAF1 93529 110 - 1
UGG---AAAUCACAGCUUU---CCACC-UCAGUACUCUCC-AUAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU
(((---(((.......)))---)))..-...........(-(.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))))).. ( -31.20)
>DroPse_CAF1 109070 103 - 1
-UG--------GGAA-UUG---CACCCCACACCAGUC--AAUUAGCAGAACAAGGUUUCGAUCCCCGGACCUCUGGGUUAUGGGCCCAGCGCGCUUCCGCUGCGCCACUCUGCUAGUU
-((--------((..-...---...))))........--((((((((((..............(((((....))))).....(((.(((((......))))).)))..)))))))))) ( -37.20)
>DroGri_CAF1 75892 111 - 1
UUGUGCGGUAUACAAUCACCCACAAGCUACUCAAU-------UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU
(((((.(((........)))))))).......(((-------.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).))) ( -34.80)
>DroMoj_CAF1 91991 107 - 1
UUG---GAAACUCAUUUUC---CAACCGACUGUAUUC-----UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU
(((---((((.....))))---)))............-----.(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... ( -32.00)
>DroPer_CAF1 67118 104 - 1
UUG--------GGAA-UUG---CACCCCACACCAGUC--AAUUAGCAGAACAAGGUUUCGAUCCCCGGACCUCUGGGUUAUGGGCCCAGCGCGCUUCCGCUGCGCCACUCUGCUAGUU
.((--------((..-...---...))))........--((((((((((..............(((((....))))).....(((.(((((......))))).)))..)))))))))) ( -37.40)
>consensus
UUG________GCAA_UUG___CAACCCACACUAGUC_____UAGCAGAGCAAGGUUUCGAUCCUCGGACCUCUGGGUUAUGGGCCCAGCACGCUUCCACUGCGCCACUCUGCUUGUU
...........................................(((((((..(((((.((.....)))))))((((((.....))))))..(((.......)))...))))))).... (-25.30 = -25.63 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:05 2006