Locus 4661

Sequence ID	2R_DroMel_CAF1
Location	15,228,456 – 15,228,571
Length	115
Max. P	0.524508

overview

Window 5

Location	15,228,456 – 15,228,571
Length	115
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	86.38
Mean single sequence MFE	-28.35
Consensus MFE	-21.54
Energy contribution	-22.10
Covariance contribution	0.56
Combinations/Pair	1.16
Mean z-score	-1.40
Structure conservation index	0.76
SVM decision value	-0.02
SVM RNA-class probability	0.524508
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15228456 115 + 20766785
AUACAAAAUUUGAUGCUAAAGAAGACUCUCUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUUAUUGCAAAUGAUGCGAUCAGUUCGGAGCAACCGAGGAA
.........(((((((....((((.....))))...((((.....(((.(((((.((....)).))))).))).....)))).......)).)))))(((((.....)))))... ( -23.90)
>DroSim_CAF1 54787 115 + 1
AUACCAAAUUAGAUGAUAAAGAUGACUCUCUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUCAUUGCAAAUGAUGCGAUCAGUUCCGAGCAACCGAGGAA
...((........((((((((((.(((..((....))..))))))))))))).(((((...((((.(((...(((((((.....)))))))..))).))))))))).....)).. ( -29.30)
>DroEre_CAF1 59182 115 + 1
AUACCAUAUUUGAUCCUAAAGAUAGCUCACUUCAAAGCAAGUGCUUUUACCACUGCUUACUGGAACUGAAAGGUGUUAUUGCAAAUGACACGAUCACUUCGGUCGAGCCGAGGAA
..........(((((...........(((.(((.(((((.(((.......))))))))....))).)))...(((((((.....))))))))))))((((((.....)))))).. ( -29.50)
>DroYak_CAF1 61588 115 + 1
AUAGCAAGUUAGAUGCUGAAGAUAGCUCACUUCAAAGCAAGUGUUUCUAUCAUUGCUUACUGGAAGUGAAAGGUGUUAUUGCCAAUGAUGCAAUCACUUCGGUCCAAUCGAGGAA
.(((((.......)))))..(((.(((((((((.((((((.((.......))))))))....)))))))..(((......)))......)).))).(((((((...))))))).. ( -30.70)
>consensus
AUACCAAAUUAGAUGCUAAAGAUAACUCACUUCAAAGCAAGUGUUUUUAUCACUGCUUACUGGAAGUGAAAGGUGUUAUUGCAAAUGAUGCGAUCACUUCGGACCAACCGAGGAA
...........(((............(((((((.(((((.(((.......))))))))....)))))))...(((((((.....))))))).))).((((((.....)))))).. (-21.54 = -22.10 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:26:00 2006