| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,180,356 – 15,180,447 |
| Length | 91 |
| Max. P | 0.919861 |
| Location | 15,180,356 – 15,180,447 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.08 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -27.25 |
| Energy contribution | -29.70 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15180356 91 + 20766785 GAUAACGAG-GAAAAACAUUUAGGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACUCGCAGCUACCGGAACCGAUGUUGCUGGU---------G .........-......(((...((((((...(((....)))(((((.(((((((((((.....)))).))))))).))))).)))))).))---------) ( -35.60) >DroSec_CAF1 10808 91 + 1 GAUAACGAG-GAUAAACAUUUAGGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACUCGCAGCUACUGGAACCGAUGUUGCUGGU---------G .........-......(((...((((((...(((....)))(((((.(((((((((((.....)))).))))))).))))).)))))).))---------) ( -33.40) >DroSim_CAF1 10795 91 + 1 GAUAACAAG-GAUAAACAUUUAGGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACUCGUAGCUACUGGAACCGAUGUUGCUGGU---------G .........-......(((...((((((...(((....)))(((((.(((((((((((.....)))).))))))).))))).)))))).))---------) ( -31.40) >DroEre_CAF1 10840 91 + 1 ACGGACGAG-GAAAAACAUUUAAGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACCCGCAGCUACUGGAACCGAUGUCGCUGGC---------G .(((.(((.-(....................(((....)))(((((.((((((((((((...))))).))))))).)))))).))))))..---------. ( -33.20) >DroYak_CAF1 10830 91 + 1 AAGGACGAG-GAAAAACAUUUAGGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACCCGCAGCUACUGGAACCGAUGUUGCUGGA---------G .........-............((((((...(((....)))(((((.((((((((((((...))))).))))))).))))).))))))...---------. ( -34.90) >DroAna_CAF1 7722 101 + 1 GAGAACGAUUCAAAAACAUGUAAGCAACUUACAAGAAAUUGUCGGUGCCGAUGGUGCGGCUGUAGCAGCUACAGGGACCGAUGGUUUAGGUGUACUAGUUG ........................(((((((((..((((..(((((.((..((((...((....)).))))..)).)))))..))))...))))..))))) ( -31.20) >consensus GAGAACGAG_GAAAAACAUUUAGGCAACUUACAAGAAAUUGUCGGUGCCGGUGGUGCGGCACUCGCAGCUACUGGAACCGAUGUUGCUGGU_________G ......................((((((...(((....)))(((((.((((((((((((...))))).))))))).))))).))))))............. (-27.25 = -29.70 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:46 2006