Locus 4645

Sequence ID 2R_DroMel_CAF1
Location 15,175,854 – 15,175,957
Length 103
Max. P 0.965295
window7469

overview

Window 9

Location 15,175,854 – 15,175,957
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.68
Mean single sequence MFE -31.89
Consensus MFE -27.58
Energy contribution -27.66
Covariance contribution 0.09
Combinations/Pair 1.16
Mean z-score -3.82
Structure conservation index 0.86
SVM decision value 1.58
SVM RNA-class probability 0.965295
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15175854 103 - 20766785
----AAUCACAGCCUUUAAUGUAGAGGGAAUAGUUGCUGUGCUGUAAGUUAAUAUACCAUAUCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCUAACAU
----.......(((((((.(((((((((((((((..(((((.((((..(...........)..)))).)))))..)))))))))))))))..))))).))....... ( -31.00)
>DroPse_CAF1 11005 100 - 1
-----ACACCAGCCUUUGAAGUAGAGAGAAUAGUUGCUGUGCUAUAUGUCCUUCGACUC--UAUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG
-----......(((((((...(((((((((((((..(((((.((((((((....)))..--.))))).)))))..)))))))))))))....))))).))....... ( -34.20)
>DroGri_CAF1 2461 106 - 1
UGUGGUUUAUAGCCUUUAAUGUAAAGAGAAUAGAUGCUGUGCUGUAUGUUGAACG-UAUUGUCUAUAUCACAGUGGCUGUUCUUUUUGUACCAAAAGUGCCGUACAA
.......((..((((((..((((((((((((((..((((((..(((((.....))-))).........))))))..))))))))))))))...)))).))..))... ( -25.60)
>DroWil_CAF1 36261 99 - 1
-----A-ACCAGCCUUUAAAGUAGAGAGAAUAGUUGCUGUGUUUUAUGCCCUUUU--CAAUUUCAUAUCACAGUGGCUGUUCUUUUUGUGCCUAAAGUGCCCCACAA
-----.-....(((((((..((((((((((((((..(((((...((((.......--......)))).)))))..))))))))))))))...))))).))....... ( -31.02)
>DroAna_CAF1 2250 98 - 1
----GAUACCCGCCUUUAAAGUAGAGAGAAUAGUGGCUGUGCUGUAAGUUU-----CAAAAUCUAUAUCACAGUGGCUGUUCUUUUUGCACCUAAAGUGCCAAACAG
----.......(((((((..((((((((((((((.((((((.((((..((.-----...))..)))).)))))).))))))))))))))...))))).))....... ( -35.30)
>DroPer_CAF1 10462 100 - 1
-----ACACCAGCCUUUGAAGUAGAGAGAAUAGUUGCUGUGCUAUAUGUCCUUCGACUC--UAUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG
-----......(((((((...(((((((((((((..(((((.((((((((....)))..--.))))).)))))..)))))))))))))....))))).))....... ( -34.20)
>consensus
_____AUACCAGCCUUUAAAGUAGAGAGAAUAGUUGCUGUGCUGUAUGUCCUUCG_CAA__UCUAUAUCACAGUGGCUGUUCUUUUUGUACCUAAAGUGCCAAACAG
...........(((((((..(((((((((((((((((((((.((((.................)))).)))))))))))))))))))))...))))).))....... (-27.58 = -27.66 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:36 2006