Locus 4631

Sequence ID 2R_DroMel_CAF1
Location 15,149,938 – 15,150,053
Length 115
Max. P 0.577877
window7440

overview

Window 0

Location 15,149,938 – 15,150,053
Length 115
Sequences 4
Columns 115
Reading direction forward
Mean pairwise identity 96.38
Mean single sequence MFE -24.69
Consensus MFE -23.98
Energy contribution -23.97
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.97
SVM decision value 0.09
SVM RNA-class probability 0.577877
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15149938 115 + 20766785
CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCCCCAGAUUUUCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA
......((((.(((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10)
>DroSec_CAF1 122042 115 + 1
CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA
......((((.(((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10)
>DroSim_CAF1 107084 115 + 1
CUCCUUUGUUAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA
......(((.((((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ ( -24.10)
>DroEre_CAF1 126200 114 + 1
CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCCCCAGAUCUCACAUUUUAAAGCAUUUUCGGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCA-CACACACA
......((((.(((((((((.(((.((..((((((..((.((....................))))..))))))..)).)))...)))))).....)))))))...-........ ( -26.45)
>consensus
CUCCUUUGUAAUCUGGCCGUAGGGUGCUGCAUUUCCACCAGAUCUCCCAUUUUAAAGCAUUUUCAGCCGAAAUGACGCUCUCGAAACGGCCCACACAGAUACACCAUCACACUCA
......(((.((((((((((.(((.((..((((((.....(......)........((.......)).))))))..)).)))...)))))).....)))))))............ (-23.98 = -23.97 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:25:09 2006