Locus 463

Sequence ID 2R_DroMel_CAF1
Location 2,638,819 – 2,638,912
Length 93
Max. P 0.554730
window885

overview

Window 5

Location 2,638,819 – 2,638,912
Length 93
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.87
Mean single sequence MFE -17.10
Consensus MFE -12.36
Energy contribution -11.80
Covariance contribution -0.56
Combinations/Pair 1.13
Mean z-score -1.61
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.554730
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2638819 93 - 20766785
AUCUUUUGUAGUUAAU-GGAAC-AACCUUUGUUGGCAACCGUGCUAAAAACACCUUUC--UUAAACCUCAUUCCACAGCUACACGCUGUAUAGCCUU
......(((((((..(-(((((-(((....))))(((....)))..............--..........))))).))))))).(((....)))... ( -16.40)
>DroSec_CAF1 73247 93 - 1
AUCUUAAGUAGUUAAU-GGAAC-AACCUUAGUUGGCAACCGUGCUAAAAACACCCUUC--UUAAACCUCAUUCCAUAGCUACACGCUGUAUAGCCUU
.......(((((((.(-(((((-(((....))))(((....)))..............--..........))))))))))))..(((....)))... ( -18.60)
>DroSim_CAF1 71077 94 - 1
AUCUUAUGUAGUUAAUAGGAAC-AACCUUAGUUGGCAACCGUGCUAAAAACACCCUUC--UUAAACCUCAUUCCAUAGCUACACGCUGUAUAGCCUU
......((((((((...(((((-(((....))))(((....)))..............--..........)))).)))))))).(((....)))... ( -16.30)
>DroEre_CAF1 71773 93 - 1
AUCUUUUUUUGUUGG--GGUUCUUCCCUCAGUUGGCAACCGUGCUAAAAACUCCACUC--UUAAACCUCAUUCCACAGCUACACGCUGUACAGCCUU
..........(((((--((.....)))....((((((....))))))...........--..............(((((.....))))).))))... ( -17.30)
>DroYak_CAF1 70753 91 - 1
---AUUUUUAGUUAG--GGAAG-AACCUUAGUUGGCAACCGUGCUAAAAACCUCACUUUUUUAAACCUCACUCCACAGCUAUACGCUGUAUAGCCUU
---........((((--(((((-........((((((....))))))........))))))))).............(((((((...)))))))... ( -16.89)
>consensus
AUCUUUUGUAGUUAAU_GGAAC_AACCUUAGUUGGCAACCGUGCUAAAAACACCAUUC__UUAAACCUCAUUCCACAGCUACACGCUGUAUAGCCUU
..........((((.................((((((....))))))...........................(((((.....))))).))))... (-12.36 = -11.80 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:14 2006