Locus 4627

Sequence ID 2R_DroMel_CAF1
Location 15,135,243 – 15,135,334
Length 91
Max. P 0.965814
window7429

overview

Window 9

Location 15,135,243 – 15,135,334
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 93.20
Mean single sequence MFE -13.40
Consensus MFE -10.94
Energy contribution -10.94
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.08
Structure conservation index 0.82
SVM decision value 1.59
SVM RNA-class probability 0.965814
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15135243 91 - 20766785
AUCCACUUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAAAAAAAAGAGAUGUGUGGUGCAAAGAAAAUAAUAACA
..........(((((.(((((((.....((((...(((.........)))..)))).....))))))).))).))................ ( -14.30)
>DroSec_CAF1 107433 89 - 1
AUCCAUUUACGCCCGGGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA--AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAAAA
..........((((..(((((((....(((((...(((.........))).....--))))).))))))))).))................ ( -12.20)
>DroSim_CAF1 91383 89 - 1
AUCCAUUUACGCCCGGGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA--AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAACA
..........((((..(((((((....(((((...(((.........))).....--))))).))))))))).))................ ( -12.20)
>DroEre_CAF1 110909 87 - 1
AUCCAUCUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACACAA--AA-AA-GAAGUGUGGAGCAAAGAAAAUAAUAACA
.....(((..((((..((((((..........)))))).........((((....--..-..-...)))))).))..)))........... ( -12.00)
>DroYak_CAF1 112213 88 - 1
AUCCAUCUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACACAA--AA-AGUGAAGUGUGGAGCAAAGAAAAUAAUAACA
.....(((..((((..(((((((((...((((...(((.........)))...))--))-.))))))))))).))..)))........... ( -16.30)
>consensus
AUCCAUUUACGCCCGAGCAUUUCACAACUUUUAAAUGCAAACAAAAAGCACAAAA__AAAAGAGAAGUGUGGUGCAAAGAAAAUAAUAACA
..........((((..((((((..........)))))).........((((...............)))))).))................ (-10.94 = -10.94 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:59 2006