Locus 4626

Sequence ID 2R_DroMel_CAF1
Location 15,129,079 – 15,129,181
Length 102
Max. P 0.688313
window7428

overview

Window 8

Location 15,129,079 – 15,129,181
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 78.01
Mean single sequence MFE -25.83
Consensus MFE -20.90
Energy contribution -19.13
Covariance contribution -1.77
Combinations/Pair 1.25
Mean z-score -1.23
Structure conservation index 0.81
SVM decision value 0.32
SVM RNA-class probability 0.688313
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15129079 102 + 20766785
AAAAAGCGCGAGGCAGCGAGGAAAGUGGAAUUUUUUGUUGUCUCCCAAUGCGUGUUUGGUGUGAACGAACUGUCGCUCAUUCUGAUGCGCUGUUAUUCCAAC
....(((((((((((((((((((.......)))))))))))))).....(((.(((((.......)))))...)))..........)))))........... ( -32.10)
>DroPse_CAF1 105527 87 + 1
---------------GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC
---------------(((((((.((((((....)))))).)))......(((((((....((((.(((....))).))))...))))))).....))))... ( -22.70)
>DroPer_CAF1 105773 87 + 1
---------------GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC
---------------(((((((.((((((....)))))).)))......(((((((....((((.(((....))).))))...))))))).....))))... ( -22.70)
>consensus
_______________GGGGGGAAGGGAUAUUUUUGUUCUGUCUUUUAUUGCGUAUUUGGUGUGAACGAACUGUCGCUCAUUUUGAUGCGCCGUUAUUCCAAC
...................((((((((((....))))))..........(((((((....((((.(((....))).))))...))))))).....))))... (-20.90 = -19.13 +  -1.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:58 2006