| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,125,466 – 15,125,581 |
| Length | 115 |
| Max. P | 0.654517 |
| Location | 15,125,466 – 15,125,581 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.24 |
| Mean single sequence MFE | -23.83 |
| Consensus MFE | -19.37 |
| Energy contribution | -19.57 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654517 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15125466 115 - 20766785 AAUUACUUGUUGUUUGUUUUAUGUGCGGUUUUUGUU-UUCCACGUGGUUUCAAACA--GAGCCACAUUUUUGCUGCUC--CCUCACAUUUAAUAAUAUAUGCUGCAAGUGCAAAAAAAAA ...(((((((.(((((((..(((((.((....((((-(.((....))....)))))--((((..((....))..))))--)).)))))..))))).....)).))))))).......... ( -25.70) >DroSec_CAF1 102127 114 - 1 AAUUAUUUGUUGUUUGUUUUAUGUGCGGUUUUUGUU-UUCCUCGUGGUUUCAAACACGGAGCCACAUUUUUGCUGCUC--CCUCACAUUUAAUAAUAUAUGCUGCAAAUGCAGA---AAA .............(((((..(((((.((.....((.-......((((((((......))))))))......)).....--)).)))))..)))))......((((....)))).---... ( -26.32) >DroSim_CAF1 86088 114 - 1 AAUUAUUUGUUGUUUGUUUUAUGUGCGGUUUUUGUU-UUCCUCGUGGUUUCAAACACGGAGCCACUUAUUUGCUGCUC--CCUCACAUUUAAUAAUAUAUGCUGCAAAUGCAGA---AAA .............(((((..(((((.((.....((.-......((((((((......))))))))......)).....--)).)))))..)))))......((((....)))).---... ( -26.32) >DroEre_CAF1 104921 114 - 1 AAUUAUUUUUUGCUGGUUUCAUGUGCGGUUUUUGUA-UUCCUCGUGGUUUCAAACA--GAGCCAUAUUUUUGCUGCCCGCUCUCACAUUUAAUAAUUUAUGCUGCAAAUGCAGA---AAA .....((((((((..((..((((.((((.....(((-......(((((((......--))))))).....)))...)))).................))))..))....)))))---))) ( -21.07) >DroYak_CAF1 106557 113 - 1 AAUUAUUUUUUGUUUGUUUUUUGUGCGGUUUUUUUCUUUCCUCGUGGUUUCAAACA--GAGCCAUAUUUUUGCUGCUC--CCUCACAUUUAAUAAUAUAUGCUGCAAGUGCAGA---AAA ................(((((((..((((((((((....((....))....))).)--)))))......((((.((..--....................)).)))))..))))---))) ( -19.75) >consensus AAUUAUUUGUUGUUUGUUUUAUGUGCGGUUUUUGUU_UUCCUCGUGGUUUCAAACA__GAGCCACAUUUUUGCUGCUC__CCUCACAUUUAAUAAUAUAUGCUGCAAAUGCAGA___AAA .............(((((..(((((.((...............(((((((........)))))))...............)).)))))..)))))......((((....))))....... (-19.37 = -19.57 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:57 2006