| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,119,007 – 15,119,100 |
| Length | 93 |
| Max. P | 0.877142 |
| Location | 15,119,007 – 15,119,100 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 77.76 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -13.36 |
| Energy contribution | -14.08 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877142 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15119007 93 + 20766785 CA-----------------AAAUCCUCAUGAUUCCCUCCCAUUCAAAAUU-GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUCAUUUGCUGCUGUCCAAUGUCCCAG ..-----------------............................(((-((((((((((...)))))((((((..((.......))..))))))))))))))....... ( -20.70) >DroSec_CAF1 95616 93 + 1 CA-----------------AAAUCCUCAUGAUUCCCUCUCAUUCGAAAUU-GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUGAUUUGCUGCUGUCCAAUGUCCCAG ..-----------------.........................((.(((-((((((((((...)))))((((((...((...)).....)))))))))))))).)).... ( -21.00) >DroSim_CAF1 79567 85 + 1 CA-----------------AAAUCCU--------CCUCUCAUCCGAAAUU-GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUCAUUUGCUGCUGUCCAAUGUCCCAG ..-----------------.......--------..........((.(((-((((((((((...)))))((((((..((.......))..)))))))))))))).)).... ( -22.00) >DroEre_CAF1 98471 93 + 1 GA-----------------AAGUCCACAUGAUUUCCACCCAUUCGAAAUU-GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUCAUUUGCUGCUGUCCAAUGUCCCAG (.-----------------(((((.....))))).)........((.(((-((((((((((...)))))((((((..((.......))..)))))))))))))).)).... ( -23.10) >DroYak_CAF1 99897 93 + 1 AA-----------------AAACCCACAUGAUGCCCUCUCAUUCGAAAUU-GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUCAUUUGCUGCUGUCCAAUGUCCCAG ..-----------------.........................((.(((-((((((((((...)))))((((((..((.......))..)))))))))))))).)).... ( -22.00) >DroPer_CAF1 99911 104 + 1 GGAUGUGCACACGAUGGGGGAAUCUUCAC-ACUCUCUCUGUCUCUAUAUCUGCCUCAGAUGAUCCAUCUGCAACAUUUGUUCAGCUCAUUUGCCGCC------UGUCCCAG (((((.((....(((((((((........-..)).))))))).............(((((((.....(((.(((....)))))).)))))))..)).------)))))... ( -21.40) >consensus CA_________________AAAUCCUCAUGAUUCCCUCUCAUUCGAAAUU_GGACAAGAUGAUCCAUUUGCAGCAUUUGCUCAGCUCAUUUGCUGCUGUCCAAUGUCCCAG ...................................................((((((((((...)))))((((((..((.......))..)))))).......)))))... (-13.36 = -14.08 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:55 2006