Locus 4619

Sequence ID 2R_DroMel_CAF1
Location 15,110,398 – 15,110,512
Length 114
Max. P 0.740680
window7421

overview

Window 1

Location 15,110,398 – 15,110,512
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 75.79
Mean single sequence MFE -45.27
Consensus MFE -28.06
Energy contribution -29.23
Covariance contribution 1.18
Combinations/Pair 1.47
Mean z-score -1.46
Structure conservation index 0.62
SVM decision value 0.45
SVM RNA-class probability 0.740680
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15110398 114 + 20766785
GUUGGUGGCCACGAUGUGCGGCAAGCCUGCUCCAUUGGAGCGUUAACCCAACAGAUUGCCUGGGAGGAGAGCCACCUUGGCAACUAUAGGCGUAUAAUGCCGCCACGAGAUUCC
.((.((((((((...))).((((.(((((((((...)))))...........((.(((((.(((.((....)).))).)))))))..))))......))))))))).))..... ( -40.80)
>DroVir_CAF1 130213 114 + 1
GCCGGUGGCGCUGACCUGAAUCAGGCAUGUUCCCUGGGCGCCUUGGCCCAGCAAAUUGCCUGGGAGGAGAGCCAUUUGGGCAACUAUAGACGGAUCAUGCCGCCCACAAAUAGC
....((((.(((((......)))((((((.(((((((((......))))))....(((((..((.((....)).))..)))))........))).))))))))))))....... ( -46.80)
>DroGri_CAF1 120525 114 + 1
GCUGGUGGUGCUGAUGUUAGCCAGGCAUGCUCCCUCAGUGCUUUGGCACAGCAGAUUGCCUGGGAGGAGAGUCAUAUGGGCAACUAUCGACGCAUUAUGCCGCCGACAGAUGCC
(.((((((((.((((((...(((((((((((......((((....))))))))...))))))).......(((..((((....)))).))))))))))))))))).)....... ( -42.80)
>DroEre_CAF1 89943 114 + 1
GCUGGGGGCCACGAUGUGCGGCAAGCCUGCUCCAUUGGGGCGUUAACCCAACAGAUUGCCUGGGAGGAGAGCCAUCUUGGCAACUAUCGGCGUAUAAUGCCGCCUCGGGACUCC
.((((((((((.((((.((((....))..((((.(((((.......)))))(((.....)))))))....)))))).))))......((((((...))))))))))))...... ( -46.50)
>DroWil_CAF1 154242 114 + 1
GCUGGUGGGACUGAUGCAAAACAGGCGUGUUCCAUUGGAGCAUUGGCCCAGCAAAUCGCUUGGGAGGAGAGCCAUUUGGGUAACUAUCGUCGCAUUAUGCCGCCAAGAGAAUCA
..((((((.(.((((((......((((((((((...)))))))...((((((.....)).))))......)))...(((....))).....))))))).))))))......... ( -37.80)
>DroAna_CAF1 91140 114 + 1
GCCGGUGGCAGUGAAGUGCGCCAGACCUGUUCCAUCGGGGCACUCACCCAGCAGAUCGCCUGGGAGGAGAGCCACCUGGGUAACUAUCGGCGCAUCAUGCCGCCGCGCGACUCC
((((((((((.(((..((((((.((...(((((...(((((.(((.((((((.....).)))))..))).))).))..)).)))..))))))))))))))))))).))...... ( -56.90)
>consensus
GCUGGUGGCACUGAUGUGAGCCAGGCCUGCUCCAUUGGAGCAUUGACCCAGCAGAUUGCCUGGGAGGAGAGCCAUCUGGGCAACUAUCGGCGCAUAAUGCCGCCAAGAGAUUCC
...(((((((.((((((((.........((((.....))))..............(((((((((.((....)).)))))))))......))))))))))))))).......... (-28.06 = -29.23 +   1.18)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:51 2006