Locus 4615

Sequence ID 2R_DroMel_CAF1
Location 15,092,615 – 15,092,715
Length 100
Max. P 0.574496
window7415

overview

Window 5

Location 15,092,615 – 15,092,715
Length 100
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 76.84
Mean single sequence MFE -22.76
Consensus MFE -12.01
Energy contribution -11.90
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -1.72
Structure conservation index 0.53
SVM decision value 0.08
SVM RNA-class probability 0.574496
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15092615 100 + 20766785
GCCGCCCCGCGCCAUCGCCGCCGCCAACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC
........((((...((((...(((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.)))) ( -28.10)
>DroSec_CAF1 69273 87 + 1
GCCU-------------UCGCCGCCGACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC
(((.-------------.(((((((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.).)) ( -23.90)
>DroSim_CAF1 47212 87 + 1
GCCU-------------UCGCCGCCGACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CGUGC
(((.-------------.(((((((....)))((((.(((((....(((((...)))))......)))))..))))..............)))).-.).)) ( -23.90)
>DroWil_CAF1 124664 91 + 1
CCUU----UUUCCAGAGGCGAUG-----CCCCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-UACCA
....----........((..(((-----((..((((.(((((....(((((...)))))......)))))..))))(((....)))....)))))-..)). ( -19.90)
>DroMoj_CAF1 113437 84 + 1
GCCG-------------GCACC----GCCCACAUGCAUUUUGUUUGGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCAGGCACCC
((((-------------((...----)))...((((.(((((..(((((((...)))))))....)))))..))))..............)))........ ( -24.50)
>DroAna_CAF1 71383 100 + 1
GCCAAGCCAAGCCAGCCAAACACCCUCUUGCCAUGCAUUUUGUUUUGCCGUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU-CAUGC
(((..(.((((...............)))).)((((.(((((....(((((...)))))......)))))..))))..............)))..-..... ( -16.26)
>consensus
GCCU_____________GCGCCGCC_ACUGGCAUGCAUUUUGUUUUGCCAUUUUAUGGCCAUCAUCAAAAGCGCAUUAAAAUUUUACUAAGGCGU_CAUGC
(((.............................((((.(((((....(((((...)))))......)))))..))))(((....)))....)))........ (-12.01 = -11.90 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:46 2006