Locus 4612

Sequence ID 2R_DroMel_CAF1
Location 15,069,540 – 15,069,636
Length 96
Max. P 0.706718
window7411

overview

Window 1

Location 15,069,540 – 15,069,636
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 80.76
Mean single sequence MFE -23.30
Consensus MFE -11.83
Energy contribution -12.98
Covariance contribution 1.16
Combinations/Pair 1.21
Mean z-score -2.46
Structure conservation index 0.51
SVM decision value 0.37
SVM RNA-class probability 0.706718
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15069540 96 + 20766785
ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUAAUCGCAUC
.....((((((.((((((.......(((((....)))))..(((...((((.--(((.....))).)))).)))...)))))).))))))........ ( -27.00)
>DroSec_CAF1 46491 96 + 1
ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC
......(((((.((((((.......(((((....)))))..(((...((((.--(((.....))).)))).)))...)))))).)))))......... ( -25.10)
>DroSim_CAF1 24257 96 + 1
ACAUCUAAUGUUUGCUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGCUGAA--CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC
......(((((.((((((..((((((.((((((....)))))).))))(((.--(((.....))).)))..))....)))))).)))))......... ( -26.20)
>DroEre_CAF1 46544 96 + 1
ACUUGUAAUGUUUACUAAUCUCGCACUGCAUUUAUGCAGAUGCCGUGUUCAA--CCAUUCAUUGGAUCAAAGGCCAUUCGGCACACAUUUAUCGCAUC
...((..(((............((((((((....))))).))).((((....--(((.....))).......(((....)))))))...)))..)).. ( -21.70)
>DroYak_CAF1 47587 98 + 1
ACAUCUAAUGUUCACUAAUCUCGCACUGCAUUUAUGCAGAUGCUGUGUUCAGCAUCAUUCAUUGGCUCAAAGGCCAUUCGGUACACAUUUAUCGCAUC
......(((((..(((..........((((....))))(((((((....)))))))......(((((....)))))...)))..)))))......... ( -22.60)
>DroPer_CAF1 49713 81 + 1
GUCUCUAAUGGCCAGCAAUCA----C---AU---UACUGAUGCC-----GAU--CCAUUCAUGAGGCCAACUGCCACUUGCAGCACAAUUACCGCAUC
(((((.(((((.(.(((.(((----.---..---...)))))).-----)..--)))))...)))))...((((.....))))............... ( -17.20)
>consensus
ACAUCUAAUGUUUACUAAUCCCGCACUGCAUUUAUGCAGAUGCCGUGUUGAA__CCAUUCAUUGGAUCAAAGGCCAUUUGGUACACAUUUAUCGCAUC
...(((((((............((((.(((((......))))).))))...........)))))))......(((....)))................ (-11.83 = -12.98 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:42 2006