| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,068,899 – 15,068,998 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 15,068,899 – 15,068,998 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 89.77 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -19.87 |
| Energy contribution | -20.23 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15068899 99 - 20766785 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCCUCGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..((((((((((.(((((...(((((...-.)))---))....))))).))....----...)))))))---).....))))).- ( -28.01) >DroSec_CAF1 45854 100 - 1 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUUUUUUU---GCUCCUCGCUUCGCUCUC----UUUAAACUUU---UUUAUUGGGCCC- .(((((............((....))...((((..(((.(((((...(((((.....)))---))....))))).)))..)----))).......---......))))).- ( -28.50) >DroSim_CAF1 23609 99 - 1 UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCCUCGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..((((((((((.(((((...(((((...-.)))---))....))))).))....----...)))))))---).....))))).- ( -28.01) >DroEre_CAF1 45903 98 - 1 UGGCCCUUAUCAUUUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUU---GCUCC-UGCUUCGCUCUC----UUUCAACUUU---UUUAUUGGGCCC- .(((((............((....))..(((((((((..(((((...(((((...-.)))---))...-.....)))))..----..))))))))---).....))))).- ( -26.80) >DroYak_CAF1 46907 107 - 1 UGGCCCUUAUCGUUUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUUUGUGCUUCUCGCUUCGCUCUCUCUUUUUUAACUUU---UUUAUUGGGCCCC .(((((...........(((.((.((......)))))))(((((...(((((...-..)))))((.....))..)))))................---......))))).. ( -25.10) >DroAna_CAF1 47237 102 - 1 UGGCUCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU-UUUC---CUUCUGCUCGUCGCUCGU----UUUUAACUUUUUUUUUAUUGGAACC- ..............((((((....))..(((((((((.((((((...(((.....-....---....)))....)))))).----..))))))))).......))))...- ( -19.12) >consensus UGGCCCUUAUCGUAUCCGGCACACGCAUAAAAGUUGGCCGAGUGUUUGCAAAUUU_UUUU___GCUCCUCGCUUCGCUCUC____UUUCAACUUU___UUUAUUGGGCCC_ .(((((...........(((.((.((......)))))))(((((...((.....................))..))))).........................))))).. (-19.87 = -20.23 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:41 2006