| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,021,322 – 15,021,412 |
| Length | 90 |
| Max. P | 0.820790 |
| Location | 15,021,322 – 15,021,412 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.06 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -16.76 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.820790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15021322 90 + 20766785 -------UA--GUAUAUGUGUGGCUAAGACU-AAAGCUUAAGCUGG-CGCUAUUUGCCUGCAUUUCUUUGCUCGAAAACAACUCGUUUGUGGAGCAACUAC--------- -------((--((....(((((((((((.(.-...)))).))))((-((.....)))).)))).....(((((.(((((.....)))).).))))))))).--------- ( -19.70) >DroSec_CAF1 8551 90 + 1 --------A--GUAUAUGAGUGGCUAAGACUUCAAGCUGAAGCUGG-GGCUAUUUGCCUACAUUUCUUUGCUCCAAAACAACUCGUUUGUGGAGCAACUAC--------- --------.--(((..(((((((((.((.((((.....))))))..-)))))))))..)))......((((((((((((.....)))).))))))))....--------- ( -29.70) >DroSim_CAF1 7185 90 + 1 --------A--GUAUAUGAGUGGCUAAGACUUCAAGCUGAAGCUGG-GGCUAUUUGCCUGCAUUUCUUUGCUCCAAAACAACUUGUUUGUGGAGCAACUAC--------- --------.--(((..(((((((((.((.((((.....))))))..-)))))))))..)))......((((((((((((.....)))).))))))))....--------- ( -30.00) >DroEre_CAF1 8558 95 + 1 UAAGUAAGA--GUGAAUGGGUAGCUAAGACU-AAA-------CUGG-GGCCAUUUG-CUGCAUUUCUUUGCUCCAAAACAACUCGUUUGUGGAGCAACUACGAGUAC--- ...(((..(--(..(((((.(.....((...-...-------))..-).)))))..-))........((((((((((((.....)))).)))))))).)))......--- ( -24.60) >DroYak_CAF1 8525 109 + 1 UACGUUUGUGUGUGUUUGUGUAGCUAAGACU-AAAGCUGGGACUGGAGGCAAUUUGCCUGCAUUUCUUUGCUCCAAAACAACUCGUUUGUGGAGCAACUACGAGUACCAG ........((.((((((((((((((......-..)))))(((.((.((((.....)))).)).))).((((((((((((.....)))).)))))))).))))))))))). ( -33.60) >consensus ________A__GUAUAUGAGUGGCUAAGACU_AAAGCUGAAGCUGG_GGCUAUUUGCCUGCAUUUCUUUGCUCCAAAACAACUCGUUUGUGGAGCAACUAC_________ ...........(((..(((((((((.((..............))...)))))))))..)))......((((((((((((.....)))).))))))))............. (-16.76 = -17.48 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:35 2006