| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 15,020,908 – 15,021,016 |
| Length | 108 |
| Max. P | 0.912394 |
| Location | 15,020,908 – 15,021,016 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.61 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -16.11 |
| Energy contribution | -18.67 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.912394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 15020908 108 - 20766785 UGUUUAAGGAGUUUACAAAAUCCUUUAGCCAACUUGCAUGUGAAAUGUAACAAUUUAUUUUAAAUUCCCAUUGUCUUUCAUUUAUUGAAAGAGUUUAAGAUAGA-----------UUUU .(((.(((((..........))))).)))....((((((.....)))))).((((((((((((((........(((((((.....)))))))))))))))))))-----------)).. ( -23.00) >DroSec_CAF1 7987 110 - 1 UGC---------AUACAAAAGCCUUAAGCCAACUUGCAUGUGAAGUGUAACAUUUUAUUUUGAAUUUCCAUUGCCUUUCAUUUAUUGAAAGAGUUUAAGAUAGAGGCUUUUAAUAAUUU ...---------....(((((((((........((((((.....)))))).....(((((((((((........((((((.....))))))))))))))))))))))))))........ ( -24.10) >DroSim_CAF1 6638 110 - 1 UGC---------AUACAAAAGCCUUAAGCCAACUUGCAUGUGAAAUGUAACAUUUUAUUUUAAAUUUCCAAUGUCCUUCAUUUAUUGAAAGAGUUUAAGAUAGAGGCUUUUAAUAAUUU ...---------....(((((((((........((((((.....)))))).....((((((((((((.(((((.........)))))...)))))))))))))))))))))........ ( -23.30) >consensus UGC_________AUACAAAAGCCUUAAGCCAACUUGCAUGUGAAAUGUAACAUUUUAUUUUAAAUUUCCAUUGUCUUUCAUUUAUUGAAAGAGUUUAAGAUAGAGGCUUUUAAUAAUUU ................(((((((((........((((((.....)))))).....((((((((((........(((((((.....))))))))))))))))))))))))))........ (-16.11 = -18.67 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:31 2006