Locus 4604

Sequence ID 2R_DroMel_CAF1
Location 15,006,406 – 15,006,510
Length 104
Max. P 0.875560
window7399

overview

Window 9

Location 15,006,406 – 15,006,510
Length 104
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 81.73
Mean single sequence MFE -36.87
Consensus MFE -25.55
Energy contribution -25.55
Covariance contribution 0.00
Combinations/Pair 1.32
Mean z-score -2.50
Structure conservation index 0.69
SVM decision value 0.89
SVM RNA-class probability 0.875560
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 15006406 104 - 20766785
AACUGGUACCGAUGGAUCGGUGGCCCUGUACAAUCGACAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUCUCUACGUAAUAAUGA----
...((((..((.((.((((((((((((((.......)))))))).)))))).)).)).))))(((.....(..(((((...)))))..).....))).......---- ( -34.60)
>DroSec_CAF1 760 104 - 1
AACUGGAACCGAUGGAUCGGUGGCCUUGUACAAUCGGCAGGGCCAACUGGUGCAUCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUCCCAAUGUAAUAAUGA----
.....((..(((((.((((((((((((((.......)))))))).)))))).)))))..)).(((....(((((((((...)))))..))))..))).......---- ( -40.30)
>DroSim_CAF1 760 104 - 1
AACUGGAACCGAUGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAUGCUCAAUACCAAUGUAAUAAUGA----
.....((..((.((.((((((((((((((.......)))))))).)))))).)).))..)).(((....(((.(((((...)))))...)))..))).......---- ( -37.20)
>DroEre_CAF1 757 100 - 1
AACUGGAACCGACGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCGGGGUGAGCUAAGUCCGAUCCCAAUGCAAUA--------
....(((.(.((((.((((((((((((((.......)))))))).)))))).)(((.((((...(....).)))).)))..))).).)))..........-------- ( -37.90)
>DroYak_CAF1 1432 100 - 1
AACUGGAACCGAUGGAUCAGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUGUCGGGGUGAGCUAAACCCGAAACCAAUGUAAUA--------
...(((...((.((.((((((((((((((.......)))))))).)))))).)).))..........(((((..........)))))..)))........-------- ( -38.00)
>DroPer_CAF1 760 105 - 1
UACAGGUACAGAUGGAUCUGUGGCGUUGUACAAUCGCCAGGGACAACUGGUGCAGCGCAUUAUCCUCGCAGGGUAAGACCAGCCCC---CAUAAGUUGUACUCAAAAU
....(((((((((((..(((.((((((((......(((((......)))))))))))).((((((.....))))))..))))...)---)))...)))))))...... ( -33.20)
>consensus
AACUGGAACCGAUGGAUCGGUGGCCCUGUACAAUCGGCAGGGCCAACUGGUGCAGCGCAUCAUACUUUCUGGGUGAGCUAAGCCCAAUCCCAAUGUAAUAAUGA____
...(((...((.((.((((((((((((((.......)))))))).)))))).)).)).............((((.......))))....)))................ (-25.55 = -25.55 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:24:30 2006