Locus 46

Sequence ID 2R_DroMel_CAF1
Location 1,297,457 – 1,297,576
Length 119
Max. P 0.864136
window86

overview

Window 6

Location 1,297,457 – 1,297,576
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 72.34
Mean single sequence MFE -22.56
Consensus MFE -13.40
Energy contribution -14.90
Covariance contribution 1.50
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.59
SVM decision value 0.84
SVM RNA-class probability 0.864136
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1297457 119 + 20766785
UGCUGUUAUCGGUUCCUUCUCUUUCCAUUGACUAAGGUUCUCAGUUUUUA-UGUAUUGUACUAUGUAUGUUUUCCGACGAGAAAUUUUGAUUUCAGCACUUAGAUCUGGUCCCGGAUUCG
(((((..(((((..((((.((........))..))))(((((.(((...(-(((((........)))))).....))))))))...)))))..)))))....((((((....)))))).. ( -24.90)
>DroSec_CAF1 25473 92 + 1
UGCUGUUAUCGGUUCUUUCUCUUUCCAUUGACUAAGGUUCUUGGUUUGUA-UGAAUUC-------UAUGUUUUCCGACGAGGAAUUUCGAUUUCAGCACU--------------------
(((((..(((((...((((((....(((.(((((((...)))))))...)-)).....-------...(((....)))))))))..)))))..)))))..-------------------- ( -24.40)
>DroSim_CAF1 29671 92 + 1
UGCUGUUAUCGGUUCUUUCUCUUUCCAUUGACUAAGGUUCUUAGUUUGUA-UGAAUUG-------UAUGUUUUCCGUCGAGGAAUUUCGAUUUCAGCACU--------------------
(((((..(((((...((((((....(((.(((((((...)))))))...)-))....(-------.(((.....))))))))))..)))))..)))))..-------------------- ( -23.50)
>DroEre_CAF1 34302 113 + 1
UUCGGUUAUCGGUUCCCUCUCUUCCCCUUGACUGCGGUUCUUUGUUUUUUUUUUAUAU-------UAUGUAGUCCUACGAGGCAUUUCCAUUUCAGCACUCAGAUCCAGCCCCGGAUUCG
(((((.....((((...(((.........(((((((......................-------..)))))))....(((((............)).))))))...))))))))).... ( -17.46)
>consensus
UGCUGUUAUCGGUUCCUUCUCUUUCCAUUGACUAAGGUUCUUAGUUUGUA_UGAAUUG_______UAUGUUUUCCGACGAGGAAUUUCGAUUUCAGCACU____________________
(((((..(((((...((((((........(((((((...)))))))......................(((....)))))))))..)))))..)))))...................... (-13.40 = -14.90 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:24:39 2006