Locus 459

Sequence ID 2R_DroMel_CAF1
Location 2,619,607 – 2,619,704
Length 97
Max. P 0.795980
window878

overview

Window 8

Location 2,619,607 – 2,619,704
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 86.23
Mean single sequence MFE -30.13
Consensus MFE -24.27
Energy contribution -25.05
Covariance contribution 0.78
Combinations/Pair 1.14
Mean z-score -2.39
Structure conservation index 0.81
SVM decision value 0.60
SVM RNA-class probability 0.795980
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2619607 97 - 20766785
CUCUUUGAGUGGCCAUCAAAUCUGGCCAAUUGUUCUUCAAUAUCGCUGAGCUGGAUAUCGUCGGCAAUGGCCUGGUUGAAGUAGCAGUUGGCCUUCC-
...(((((.......)))))...((((((((((((((((((...(((..(((((......)))))...)))...))))))).)))))))))))....- ( -35.70)
>DroPse_CAF1 62437 97 - 1
CUCUUUGAGUGGCCAUCAAACCUAGCCAAUUGUUCUUCAAUAUCGCUUAGCUGGAUAUCGUCGGCAAUGGCCUUAUUGAAAUAACAGAACGUAUCCU-
.........((((...........))))...(((((((((((..(((..(((((......)))))...)))..))))))......))))).......- ( -20.80)
>DroEre_CAF1 53462 98 - 1
CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCGUCAGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCCCU
...(((((.......)))))...((((.((((((((((((((..((((.(((((......)))))..))))..)))))))).)))))).))))..... ( -34.50)
>DroWil_CAF1 73495 97 - 1
UGCUGCUGCUGCCCAUCAAUUCUGGCCAAUUGUUCUUCAAUAUCGCUUAACUGUAUAUCAUCAGCAAUGGCCAUAUUGAAAUAGCAGAAAAUAUCCC-
.....((((((....(((((..((((((.(((((.....((((.((......))))))....))))))))))).)))))..))))))..........- ( -24.00)
>DroYak_CAF1 51736 97 - 1
CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUGAGCUGGAUAUCGUCGGCAAUGGCCUUGUUGGAGUAGCAGUGGGCCUCCC-
...(((((.......)))))...((((.((((((((((((((..(((..(((((......)))))...)))..)))))))).)))))).))))....- ( -32.50)
>DroAna_CAF1 53330 97 - 1
CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCAUCGGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCUC-
...(((((.......)))))...((((.((((((((((((((..((((.(((((......)))))..))))..)))))))).)))))).))))....- ( -33.30)
>consensus
CUCUUUGAGUGGCCAUCAAACCUGGCCAAUUGUUCUUCAAUAUCGCUAAGCUGGAUAUCGUCGGCAAUGGCCUUGUUGAAGUAGCAGUGGGCCUCCC_
.........((((((.......))))))((((((((((((((..(((..(((((......)))))...)))..)))))))).)))))).......... (-24.27 = -25.05 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006