Locus 4585

Sequence ID 2R_DroMel_CAF1
Location 14,971,100 – 14,971,217
Length 117
Max. P 0.590890
window7357

overview

Window 7

Location 14,971,100 – 14,971,217
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.50
Mean single sequence MFE -34.05
Consensus MFE -32.29
Energy contribution -33.85
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.52
Structure conservation index 0.95
SVM decision value 0.12
SVM RNA-class probability 0.590890
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14971100 117 + 20766785
UGGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGGGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU---AAUAUUAGUAAUCGUA
..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))).((..((((....))))..))..---...........)))). ( -33.50)
>DroSim_CAF1 989 117 + 1
UGGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU---AAUAUUAGUAAUCGUA
..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......---................ ( -35.10)
>DroEre_CAF1 1412 119 + 1
UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGUUUAUGUCGGCUAAUCGGCUAUCAAUA-UAAUAAUAGUAAUCGUA
..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....)))).......-................. ( -32.60)
>DroYak_CAF1 1111 120 + 1
UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAUAAUAAUAAUAGUAAUCGUA
..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......................... ( -35.00)
>consensus
UAGACGGAGGAAAAUAGUAAUAUUUAACUGCGUUGCGUGAGCGGGACAAUCGUCGUUUGCCAAUUGCGGCCACCGCUUAUGUCGGCUAAUCGGCUAUCAAU___AAUAAUAGUAAUCGUA
..((((.((..(((((....)))))..)).))))(((((((((((((....)))....(((......)))..)))))))))).((((....))))......................... (-32.29 = -33.85 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:51 2006