Locus 4575

Sequence ID 2R_DroMel_CAF1
Location 14,952,690 – 14,952,785
Length 95
Max. P 0.986678
window7334

overview

Window 4

Location 14,952,690 – 14,952,785
Length 95
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 78.51
Mean single sequence MFE -27.30
Consensus MFE -21.02
Energy contribution -21.40
Covariance contribution 0.38
Combinations/Pair 1.08
Mean z-score -2.26
Structure conservation index 0.77
SVM decision value 2.05
SVM RNA-class probability 0.986678
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14952690 95 - 20766785
AAUUUGAUAUGGCAAGAAUGCAUAUACAAUUAGGAGCACCCCGCCACUUUUGAUAUGCAGGUGCUCUUGCGGACAAACCAACAUAUCCAAGUUAA----------------------
(((((((((((((((((.(((((((.(((..((..((.....))..)).)))))))))).....))))))((.....))..))))).))))))..---------------------- ( -28.70)
>DroSec_CAF1 30008 117 - 1
CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUUUUAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUUCAAGUAAAUUUUGCGAAUAAAUAAACUUCA
.(((((((((((((....))).........((((((((((..((............)).))))))))))((......))..)))).))))))......................... ( -24.30)
>DroSim_CAF1 12182 117 - 1
CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUCUGAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUGCAAGUUAAUUUUGCGAAUAAAUAAACUUCA
.((((((((((((((((..((((...((((((((((..........))))))).)))...))))))))))(......)...)))))(((((.....)))))...)))))........ ( -27.30)
>DroYak_CAF1 11831 110 - 1
CAUUUGAUAUGGUAACAAUGCAUAUGUGCAGUGGAGCACCCCGCCAAUUUUGAUAUGCAGGUGCUCUUGCGGACAAACAAACAUAUGUAAUU-------ACGAGUAAAUAAACUAGA
.(((((...(.((((...((((((((((((..((((((((..((............)).)))))))))))(......)..))))))))).))-------)).).)))))........ ( -28.90)
>consensus
CAUUUGAUAUGGCAAGAAUGCACAUACAUUUAGGAGCACCCCGCCACUUUUGAUAUGCAGGUGCUCUUGCGGACAAACGAACAUAUGCAAGUUAA____GCGAAUAAAUAAACUUCA
.(((((((((((((....))).........((((((((((..((............)).))))))))))............))))).)))))......................... (-21.02 = -21.40 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:29 2006