| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,934,316 – 14,934,434 |
| Length | 118 |
| Max. P | 0.738636 |
| Location | 14,934,316 – 14,934,434 |
|---|---|
| Length | 118 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 96.07 |
| Mean single sequence MFE | -34.60 |
| Consensus MFE | -30.03 |
| Energy contribution | -30.70 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738636 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14934316 118 - 20766785 GGGAGGUUGAAA-AAAGCGAUUGUGUAGCGCACGAAAGAGGCGGCUUACAUAAUCGUUUAUAUCCUCCGAGUUUGUAAAUCAACACCAGAAGCGGCUAAACUGCAUUAGCAAUGCUGUU .(((((......-.(((((((((((((((((.(....)..)).)).)))))))))))))....)))))......................((((((.....(((....)))..)))))) ( -37.20) >DroSim_CAF1 20389 119 - 1 GGGAGGUUGAAAAAAAGCGAUUGUGUAGCGCACGAAAGAGGCGGCUUACAUAAUCGUUAAUAUCCUCCGAGUUUGUAAAUCAACACCAGAAGCGCCUAAACUGCAUUAGCAAUGCUUUU .(((((((....)).((((((((((((((((.(....)..)).)).)))))))))))).....)))))...................(((((((.((((......))))...))))))) ( -33.50) >DroYak_CAF1 20738 118 - 1 GGGAGGUUCAAA-AAAGCAAUUGUGUAGCGCACGAAAGAGGCGGCUUACAUAAUCGUUUAUAUCCUCCGAGUUUGUAAAUCAACACCAGAAGCGCCUAAACUGCAUUAGCAAUGCAGUU .(((((......-.((((.((((((((((((.(....)..)).)).)))))))).))))....)))))(..((((...........))))..).....((((((((.....)))))))) ( -33.10) >consensus GGGAGGUUGAAA_AAAGCGAUUGUGUAGCGCACGAAAGAGGCGGCUUACAUAAUCGUUUAUAUCCUCCGAGUUUGUAAAUCAACACCAGAAGCGCCUAAACUGCAUUAGCAAUGCUGUU .(((((........(((((((((((((((((.(....)..)).)).)))))))))))))....)))))(..((((...........))))..).........((((.....)))).... (-30.03 = -30.70 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:19 2006