Locus 4567

Sequence ID 2R_DroMel_CAF1
Location 14,930,131 – 14,930,221
Length 90
Max. P 0.985606
window7315 window7316

overview

Window 5

Location 14,930,131 – 14,930,221
Length 90
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 89.76
Mean single sequence MFE -30.40
Consensus MFE -29.35
Energy contribution -29.85
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 0.97
SVM decision value 1.06
SVM RNA-class probability 0.908715
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14930131 90 + 20766785
CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAUGU-G-----UCUUUUU--UUU---U
.(((((((((((((.......)))))).(((((.......)))))..((((..((......)).)))))))))))...-.-----.......--...---. ( -28.60)
>DroVir_CAF1 26358 88 + 1
CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAUGUCA-----AAUUUUU--U------
.(((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))).....-----.......--.------ ( -28.60)
>DroYak_CAF1 16485 94 + 1
CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUUG-----ACUUUUU--UUUGGUA
((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))....-----.......--....... ( -31.80)
>DroAna_CAF1 16484 98 + 1
CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUCGAAAUAACUUUUUUAUUU---U
((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))...(((((((.....))))))---) ( -32.60)
>consensus
CUGUUUCCGUGGUGUAGCGGUUAUCACAUCUGCCUAACACGCAGAAGGCCCCCGGUUCGAUCCCGGGCGGAAACAGGUCG_____ACUUUUU__UUU___U
((((((((((((((.......)))))).(((((.......)))))..((((..((......)).))))))))))))......................... (-29.35 = -29.85 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 14,930,131 – 14,930,221
Length 90
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 89.76
Mean single sequence MFE -30.60
Consensus MFE -29.60
Energy contribution -29.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.97
SVM decision value 2.01
SVM RNA-class probability 0.985606
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14930131 90 - 20766785
A---AAA--AAAAAGA-----C-ACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG
.---...--.......-----.-...(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). ( -29.70)
>DroVir_CAF1 26358 88 - 1
------A--AAAAAUU-----UGACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG
------.--.......-----.....(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). ( -29.70)
>DroYak_CAF1 16485 94 - 1
UACCAAA--AAAAAGU-----CAACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG
.......--.......-----....((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))) ( -31.50)
>DroAna_CAF1 16484 98 - 1
A---AAAUAAAAAAGUUAUUUCGACCUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG
.---.....................((((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).))))))))) ( -31.50)
>consensus
A___AAA__AAAAAGU_____CGACAUGUUUCCGCCCGGGAUCGAACCGGGGGCCUUCUGCGUGUUAGGCAGAUGUGAUAACCGCUACACCACGGAAACAG
..........................(((((((((((((.......)))))((......(((.((((.((....))..)))))))....)).)))))))). (-29.60 = -29.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:12 2006