| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,929,458 – 14,929,555 |
| Length | 97 |
| Max. P | 0.734966 |
| Location | 14,929,458 – 14,929,555 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.64 |
| Mean single sequence MFE | -33.97 |
| Consensus MFE | -32.05 |
| Energy contribution | -32.38 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.734966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14929458 97 + 20766785 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAU-GAAGUGUAUAU---------------------- ..((.((((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..))))-...))......---------------------- ( -33.50) >DroVir_CAF1 25539 101 + 1 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAA---AGAUUGAUUCUUUAU---------------- ..((((((((((((....)))))..((((((((.......))))))((((...))))))(((((.......)))))))))))).((---(((.....)))))..---------------- ( -33.80) >DroPse_CAF1 16219 105 + 1 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAUGAAACAUUCAUUUCUUUUU--------------- .....((((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..))))((((......)))).....--------------- ( -33.40) >DroSim_CAF1 15707 120 + 1 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAUAGAAGUUUAUAUUUUUACUUUUGUGAAACUAGAA .....((((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..))))............((((((....))))))...... ( -36.20) >DroYak_CAF1 15682 97 + 1 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAUAGAAGUUUCU-U---------------------- .....((((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..))))..........-.---------------------- ( -33.30) >DroAna_CAF1 15656 102 + 1 AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAA---AGGUUCAAUUUUUUUU--------------- .(((..(((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..))).---..)))...........--------------- ( -33.60) >consensus AAGCAGUCGUGGCCGAGUGGUUAAGGCGUCUGACUCGAAAUCAGAUUCCCUCUGGGAGCGUAGGUUCGAAUCCUACCGGCUGCGAU_GAAGUUUCAAUUUUU_U________________ .....((((..((((..........((((((((.......))))))((((...))))))(((((.......)))))))))..)))).................................. (-32.05 = -32.38 + 0.33)
| Location | 14,929,458 – 14,929,555 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.64 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -27.27 |
| Energy contribution | -27.27 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.667721 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14929458 97 - 20766785 ----------------------AUAUACACUUC-AUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ----------------------...........-.(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... ( -27.30) >DroVir_CAF1 25539 101 - 1 ----------------AUAAAGAAUCAAUCU---UUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ----------------..(((((.....)))---)).((((.(((((((.......)))))(((.....((((..((((((.....))))))..))))........)))..)).)))).. ( -27.82) >DroPse_CAF1 16219 105 - 1 ---------------AAAAAGAAAUGAAUGUUUCAUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ---------------.....(((((....))))).(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... ( -29.90) >DroSim_CAF1 15707 120 - 1 UUCUAGUUUCACAAAAGUAAAAAUAUAAACUUCUAUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ...................................(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... ( -27.30) >DroYak_CAF1 15682 97 - 1 ----------------------A-AGAAACUUCUAUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ----------------------.-...........(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... ( -27.30) >DroAna_CAF1 15656 102 - 1 ---------------AAAAAAAAUUGAACCU---UUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ---------------................---.(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... ( -27.20) >consensus ________________A_AAAAAUAGAAACUUC_AUCGCAGCCGGUAGGAUUCGAACCUACGCUCCCAGAGGGAAUCUGAUUUCGAGUCAGACGCCUUAACCACUCGGCCACGACUGCUU ...................................(((..(((((((((.......)))))........((((..((((((.....))))))..)))).......))))..)))...... (-27.27 = -27.27 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:11 2006