Locus 4565

Sequence ID 2R_DroMel_CAF1
Location 14,923,363 – 14,923,465
Length 102
Max. P 0.568767
window7312

overview

Window 2

Location 14,923,363 – 14,923,465
Length 102
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.15
Mean single sequence MFE -32.53
Consensus MFE -22.53
Energy contribution -20.98
Covariance contribution -1.55
Combinations/Pair 1.44
Mean z-score -1.05
Structure conservation index 0.69
SVM decision value 0.07
SVM RNA-class probability 0.568767
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14923363 102 + 20766785
AAAUUCCCUUGGAUUGGUUCCUGCAGGCACAAACUGGAGUGGAUCUUCUAUCCUCACUGGCGUUGAGUGGGUGGGGGAACCCUCAGCCACCCACUGUCAUAU-------
..........((((.(((((((.(((.......))).)).)))))....))))....(((((.((.((((.(((((....))))).)))).)).)))))...------- ( -37.10)
>DroPse_CAF1 10425 101 + 1
AAACUCCUUGGUAUUCGUCCCACAUGGCACAAACUGCAGCGGAUCUUCGAUCCUCACGGGCGUCGAAUGGGUGGGUGAACCCUCAGCGACCCACUUUGAAG--------
...............(((((......(((.....))).(.(((((...))))).)..)))))((((((((((.(.(((....))).).))))).)))))..-------- ( -30.20)
>DroGri_CAF1 12087 104 + 1
AAACUCCUUGGUUGUGGUUCCAACUGGCACAAAUUGCAAUGGAUCCUCGAUCCGCACCGGCGUUGAGUGGGUGGGCGAACCUUCGGCUACCCACUUU-----AUAUGGU
.........(((((.((.((((....(((.....)))..)))).)).)))))...((((..((.((((((((((.(((....))).)))))))))).-----)).)))) ( -39.80)
>DroWil_CAF1 11920 102 + 1
AAAUUCCUUGGUUGUGGUUCCAGCUGGCACAAAUUGUAAUGGAUCUUCGAUCCGUACUGGCGUUGAAUGGGUGGGUGAACCCUCGGCGACCCACUACAAGUU-------
......((((...((((.((..((..(.((.....)).(((((((...))))))).)..))(((((..((((......))))))))))).))))..))))..------- ( -32.70)
>DroAna_CAF1 10111 96 + 1
GAACUCUCUCGUAUUAGUUCCGGCAGGCACAAACUGGAGUGGAUCUUCUAUCCUCACUGGCGUAGAGUGGGUCGGAGAACCCUCAGCCACCCACU------U-------
......((((((..(((((((((..........)))))(.((((.....)))).)))))))).)))((((((..(((....)))....)))))).------.------- ( -25.20)
>DroPer_CAF1 10389 101 + 1
AAACUCCUUGGUAUUCGUCCCACAUGGCACAAACUGCAGCGGAUCUUCGAUCCUCACGGGCGUCGAAUGGGUGGGUGAACCCUCAGCGACCCACUUUGAAG--------
...............(((((......(((.....))).(.(((((...))))).)..)))))((((((((((.(.(((....))).).))))).)))))..-------- ( -30.20)
>consensus
AAACUCCUUGGUAUUGGUUCCAGCUGGCACAAACUGCAGUGGAUCUUCGAUCCUCACUGGCGUUGAAUGGGUGGGUGAACCCUCAGCGACCCACUUU_A__________
....((((((......((.((....)).))......))).)))..((((((((.....)).))))))(((((.(.(((....))).).)))))................ (-22.53 = -20.98 +  -1.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:09 2006