| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,919,415 – 14,919,522 |
| Length | 107 |
| Max. P | 0.532336 |
| Location | 14,919,415 – 14,919,522 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 80.43 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -16.21 |
| Energy contribution | -16.38 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.42 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14919415 107 + 20766785 GGGGCGUGGAGUAUAAUCUAUGUCCGUCGAUUCUUCCGAGAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUAUAGGUGGAAGAGGAUGGAGAACACU-UCUGUGUCU .(((((((((......))))))))).....(((((((((((((.....))))))(((((........)))))......)))))))((((.(((.....-))).)))). ( -32.10) >DroSec_CAF1 5822 107 + 1 CGGACGUGGAGUAUAAUUUAUGUUUGUCGAUUCUUCCGAGAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUAUUGGUGGAAGAGGAUGGAGAACACU-UCUGUGUCU .(((((..(((((.....)))((((..((.(((((((((((((.....))))))......(((((........))))))))))))..))..))))...-))..))))) ( -29.60) >DroSim_CAF1 5749 107 + 1 CGGACGUGGAGUAUAAUUUAUGUUUGUCGAUUCUUCCGAGAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUAUUGGCGGAAGAGGAUGGAGAACACU-UCUGUGUCU .(((((..(((((.....)))((((..((.(((((((((((((.....)))))).....(.((((........))))))))))))..))..))))...-))..))))) ( -28.40) >DroEre_CAF1 6334 107 + 1 AGGACGUGGAGUAUAAUUAAUGUUAGUCGAUUCUUCUGAAAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUAUUGGUGGAAAUGGAGUGAGAAGAGC-UUCGUGUCU .(((((((((((.((((....))))......((((((((((((.....))))))..(((.(((((........))))).)))........))))))))-))))))))) ( -27.20) >DroYak_CAF1 5762 107 + 1 GGGACGUGCAGUAUAAUCAAUGUUAGUCGAUUCUUCCGAAAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUUUUGAUGGAAGAGGAGGGCGAAGAGC-UCUUUGUCU .((((..........((((((.((((((((......(((((((.....)))))))..)))))))).)......)))))......(((((((.....))-))))))))) ( -26.90) >DroAna_CAF1 6238 104 + 1 GAGACCAGGGGAGUAGCCCACAUUCGUCGACUCCUCCGAGAAGUUGAAUCGUUCGAUUUGUCGCAGGAAGUUAGUGGUUGAGGCGG----AGGACAUUCCCCGUGUCU .((((..(((((((.(((..((..((..(((((((.(((.(((((((.....))))))).))).))).))))..))..)).)))(.----....))))))))..)))) ( -40.30) >consensus GGGACGUGGAGUAUAAUCUAUGUUAGUCGAUUCUUCCGAGAAGUUAAACUUUUCGAUUUGACUAAGGAAAUUAUUGGUGGAAGAGGAUGGAGAACACU_UCUGUGUCU ..((((((((......))))))))......(((((((((((((.....))))))(((((........)))))......)))))))....................... (-16.21 = -16.38 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:08 2006