| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,915,197 – 14,915,304 |
| Length | 107 |
| Max. P | 0.762015 |
| Location | 14,915,197 – 14,915,304 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 81.00 |
| Mean single sequence MFE | -42.84 |
| Consensus MFE | -30.58 |
| Energy contribution | -29.42 |
| Covariance contribution | -1.16 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.762015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14915197 107 + 20766785 UCGGCAUUGCGCAGCGAUACGUUGAUAAGAAUUUCGAUGGUUGCAGGUGACUG---UGUGGCCGUCGGCGUGGGUGAGCUGCUCAAGGUCAACUUGACGUGCUUGCCCUG ........((((((((...))))...........((((((((((((....)))---)..))))))))))))(((..(((.(((((((.....))))).)))))..))).. ( -44.00) >DroPse_CAF1 1339 110 + 1 UCGGCGUUGCGCAGCGACACAUUGAUCAGAACCUCAAUGGUCGUGGGGGUCGGAGAUGUAGCGCCAGCCAGGGGCGAGCUGCUCAAGGUCAGCCUGACAUGUUUGCCCGG ..((((((((((..((((.(((.(((((.........))))))))...))))..).)))))))))......((((((((((.(((.((....))))))).)))))))).. ( -45.50) >DroSim_CAF1 1616 107 + 1 UCGGCAUUGCGCAGCGAUACAUUGAUAAGAAUUUCGAUGGUUGCUGGUGAUUG---UGUGGCCGUCGGCGUGGGUGAGCUGCUCAAAGUCAACUUGACGUGCUUGCCCUG .((((((..(.(((((((.((((((........))))))))))))))..))..---....)))).......(((..(((.((((((.......)))).)))))..))).. ( -38.20) >DroEre_CAF1 1791 107 + 1 UCGGCAUUGCGCAGCGACACGUUGAUAAGGAUUUCGAUCGUUGCUGGUGAUUG---CGUGGUUGUCGGCGUGGGUGAGCUGCUCAAGGUCAACUUGACGUGCUUGCCCUG (((((((..(((((((((..(((((........))))).))))).......))---))..).))))))...(((..(((.(((((((.....))))).)))))..))).. ( -41.51) >DroYak_CAF1 1606 101 + 1 UCGGCAUUGCGCAGCGAUACGUUGAUAAGAAUUUCGAUGGUUGCCGGU---------GUGGUUGUCGGCGUGGGUGAGCUGCUCAAGGUCAACUUGACGUGCUUGCCCUG (((((((..(((.(((((.((((((........)))))))))))..))---------)..).))))))...(((..(((.(((((((.....))))).)))))..))).. ( -42.30) >DroPer_CAF1 1334 110 + 1 UCGGCGUUGCGCAGCGACACAUUGAUCAGAACCUCAAUGGUCGUGGGGGUCGGAGAUGUAGCGCCAGCCAGGGGCGAGCUGCUCAAGGUCAGCCUGACAUGUUUGCCCGG ..((((((((((..((((.(((.(((((.........))))))))...))))..).)))))))))......((((((((((.(((.((....))))))).)))))))).. ( -45.50) >consensus UCGGCAUUGCGCAGCGACACAUUGAUAAGAAUUUCGAUGGUUGCGGGUGACUG___UGUGGCCGUCGGCGUGGGUGAGCUGCUCAAGGUCAACUUGACGUGCUUGCCCUG ...((.....)).(((((.((((((........)))))))))))...........................((((((((((.(((((.....))))))).)))))))).. (-30.58 = -29.42 + -1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:23:03 2006