Locus 4556

Sequence ID 2R_DroMel_CAF1
Location 14,896,667 – 14,896,781
Length 114
Max. P 0.555777
window7301

overview

Window 1

Location 14,896,667 – 14,896,781
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 74.91
Mean single sequence MFE -35.95
Consensus MFE -16.36
Energy contribution -16.59
Covariance contribution 0.23
Combinations/Pair 1.39
Mean z-score -1.83
Structure conservation index 0.46
SVM decision value 0.04
SVM RNA-class probability 0.555777
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14896667 114 + 20766785
AAAUCAAAAACCAGGAACAAUACUUACGAGGACCCUGGUAUUUGGCCACUGGUUUUCUACUGUUUUGGGCACUCCUCUUCUCGGCCGUGGUAUUACCACUCUUUUACCGCAUUC
......(((((((((..(((....(((.((....)).))).)))..).))))))))...........(((.............)))((((((............)))))).... ( -26.32)
>DroPse_CAF1 75021 114 + 1
AUGCCAGGAAACAGGAGCAGACCUCCAGAGGUCCCUGGUACAUGGCCAGCGGCUUCCUUCUGUUUUGGCUGCUCCUCUUCUUUGCCGUAGUGGUGCCACUCUUCUACCGCCUGC
..((.(((((..((((((((.((..((((((.(((((((.....))))).))...)).))))....)))))))))).))))).)).(((((((((.........))))).)))) ( -43.80)
>DroEre_CAF1 69130 114 + 1
AUAUCAGGAAGCAGGAGCAAAGCCUACGAGGUCCAUGGUACUUAGCCAGUGGUUUUCUGCUGUUUUGGGCGCUGCUGUUCUCGGCUGUGGUAUUGCCACUCUUUUAUAGCAUUC
...((((((((((((((....(((.....)))(((((((.....)))).))).)))))))).))))))..(((((((....)))).((((.....))))........))).... ( -33.10)
>DroWil_CAF1 108672 113 + 1
ACGGCAAC-AACAGCAGCAGAAUACUAGAGUUCCCUGGUACUUGGCCAGUGGAUUCCUCUUGUUUUGGGUUUUACUCUUCUAUGCUGUUGUGAUUCCACUAUUCUACCGCCUAC
..(((.((-(((((((..((((.((.((((.((((((((.....))))).)))...)))).))...(((.....))))))).)))))))))((.........))....)))... ( -36.50)
>DroYak_CAF1 70613 114 + 1
AAAUCAGAAACGAGGAGCAAAACUUGAGAGGUCCCUGGUAUUUGGAAGGUGGUUUUCUACUGUUCUGGGCACUCCUGUUCGCGGCUGUGGUAUUACCACUCUUCUAUAGCAUUC
....((((.((.(((..(............)..))).)).))))(((((((((...((((.((..((((((....))))))..)).))))....))))).)))).......... ( -32.20)
>DroPer_CAF1 72065 114 + 1
AUGCCAGGAAACAGGAGCAGACCUCCAGAGGUCCCUGGUACAUGGCCAGUGGCUUCCUUCUGUUUUGGCUGCUCCUCUUCUUUGCCGUAGUGGUGCCACUCUUCUACCGCCUGC
..((.(((((..((((((((.((..((((((.(((((((.....))))).))...)).))))....)))))))))).))))).)).(((((((((.........))))).)))) ( -43.80)
>consensus
AUAUCAGGAAACAGGAGCAAAACUCAAGAGGUCCCUGGUACUUGGCCAGUGGUUUCCUACUGUUUUGGGCGCUCCUCUUCUCGGCCGUGGUAUUGCCACUCUUCUACCGCAUUC
............(((((((((((....((((((.(((((.....))))).)))))).....))))))....))))).......((.((((.............)))).)).... (-16.36 = -16.59 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:58 2006