Locus 4554

Sequence ID 2R_DroMel_CAF1
Location 14,890,570 – 14,890,674
Length 104
Max. P 0.647668
window7299

overview

Window 9

Location 14,890,570 – 14,890,674
Length 104
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.88
Mean single sequence MFE -36.74
Consensus MFE -25.56
Energy contribution -28.37
Covariance contribution 2.81
Combinations/Pair 1.15
Mean z-score -1.92
Structure conservation index 0.70
SVM decision value 0.24
SVM RNA-class probability 0.647668
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14890570 104 + 20766785
UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAAAAAAGCGUAUCGGUCCGGCA
..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00)
>DroSec_CAF1 62466 104 + 1
UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAGGGAUUAGAAAGGCGAAUCGGUCCGGCA
..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00)
>DroSim_CAF1 64422 104 + 1
UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAGGGAUUAGAAAGGCGAAUCGGUCCGGCA
..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... ( -40.00)
>DroEre_CAF1 62969 104 + 1
UAUCUUUAGGGGACCCGAGCGACUGGUACCUCAAUUGGCACUGGAAAGUUGAGGUCCCCGUUUGCGGGAGAACCAAAGGAUUGAAAAAGCGGAGCGGUCCGUUA
.((((((.((...((((...(((.((.(((((((((..(....)..))))))))).)).)))..))))....)).))))))......((((((....)))))). ( -37.30)
>DroYak_CAF1 64801 92 + 1
UAUCUUUAGGCGACCGGAGCGACUGGUACCUCAAUUGGCACUUGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAGCAAAGCGG------------
.((((((..((((((((.......((.(((((((((..(....)..)))))))))))))))))))((.....)).))))))...........------------ ( -32.61)
>DroAna_CAF1 70761 104 + 1
UAUCUUUAGGGAACCGGAGCAAAUCAAUCCUCACUUGGAAGUGGAAGGUGGUGGUCCCUGGUUGUGGGAUAACGAGGGAAUACAGAAACCAGAUCGGUCUGGCA
..(((....))).(((((.(...(((.(((......)))..)))..(((.(((.(((((.(((((...))))).))))).)))....))).....).))))).. ( -30.50)
>consensus
UAUCUUUAGGGGACCGGAGCGACUGGUACCUCAAUUGGCACUCGAAGGUUGAGGUCCCCGGUUGCGGGAGAACCAAAGGAUUAAAAAAGCGGAUCGGUCCGGCA
..........(((((((.((((((((.(((((((((..(....)..)))))))))..))))))))((.....))...................))))))).... (-25.56 = -28.37 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:55 2006