Locus 455

Sequence ID	2R_DroMel_CAF1
Location	2,606,227 – 2,606,323
Length	96
Max. P	0.998159

overview

Window 8

Location	2,606,227 – 2,606,323
Length	96
Sequences	6
Columns	96
Reading direction	forward
Mean pairwise identity	72.62
Mean single sequence MFE	-30.34
Consensus MFE	-15.95
Energy contribution	-14.87
Covariance contribution	-1.08
Combinations/Pair	1.42
Mean z-score	-2.95
Structure conservation index	0.53
SVM decision value	3.02
SVM RNA-class probability	0.998159
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2606227 96 + 20766785
AACAUUCUUGCAAGUCAAUUAAGUUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU
..(((..((((..(((..(..(.((((((((((((...)))))).(((....)))(....)...)))))).)..))))...))))..)))...... ( -30.30)
>DroPse_CAF1 45805 86 + 1
-AUAUAUCUGCACUUC-------CUUGCCUCUGUCUAGCUGUGUUGGCGAAAGCCAGAGCAGAGGAGGAAGC--AGCCAAGGCAAAGAUGCUUUAU
-......((((..(((-------((..(((((((.........(((((....))))).))))))))))))))--))..((((((....)))))).. ( -32.20)
>DroSec_CAF1 40916 96 + 1
AUCAUUCUUGCAAGUCAAUUGAGUUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU
..(((..((((..(((..((((.((((((((((((...)))))).(((....)))(....)...)))))).)))))))...))))..)))...... ( -34.50)
>DroEre_CAF1 39836 94 + 1
--CAUUCUGGCAAUUUAAUCUGGUUUCUCGCAGUGCACUACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAGGCAAAGAUGCUUUAU
--.......((.((((..(((.((((((.((((((...)))))).(((....)))))))))..)))..))))....))((((((....)))))).. ( -27.70)
>DroYak_CAF1 38603 77 + 1
--UACU-----------------UUUCUCGCAGUGUACUUCUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU
--....-----------------......((..((.((((((.(((((....)))(....)..)).))))))))..))((((((....)))))).. ( -26.60)
>DroPer_CAF1 53224 86 + 1
-AUAUAUCUGCACUUC-------CUUUCCUCUGCCUAGCUGGGUUGGCGAAAGCCAGAGCAGUGGAGGAAGC--AGCCAAGGCAAAGAUGCUUUAU
-......((((.....-------..(((((((.....((((..(((((....)))))..)))))))))))))--))..((((((....)))))).. ( -30.71)
>consensus
_ACAUUCUUGCAAUUC_______UUUUUCGCAGUGUACCACUGCUGGCGAAAGCCGGAGACAAGGAAGAAGUCGAGGCAAAGCAAAGAUGCUUUAU
.......................(((((..(((.......)))(((((....)))))......)))))..........((((((....)))))).. (-15.95 = -14.87 +  -1.08)

alignment

secondary structure

dotplot

Window 9

Location	2,606,227 – 2,606,323
Length	96
Sequences	6
Columns	96
Reading direction	reverse
Mean pairwise identity	72.62
Mean single sequence MFE	-25.94
Consensus MFE	-7.02
Energy contribution	-7.80
Covariance contribution	0.78
Combinations/Pair	1.15
Mean z-score	-2.51
Structure conservation index	0.27
SVM decision value	0.88
SVM RNA-class probability	0.873259
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2606227 96 - 20766785
AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUGGUACACUGCGAAAAACUUAAUUGACUUGCAAGAAUGUU
.(((((((....)))))))....((((((((.(..(((...(((....))).((((((...)))))).............)))..).))))).))) ( -27.20)
>DroPse_CAF1 45805 86 - 1
AUAAAGCAUCUUUGCCUUGGCU--GCUUCCUCCUCUGCUCUGGCUUUCGCCAACACAGCUAGACAGAGGCAAG-------GAAGUGCAGAUAUAU-
.(((.(((....))).)))((.--(((((((((((((.(((((((...........)))))))))))))..))-------)))))))........- ( -32.10)
>DroSec_CAF1 40916 96 - 1
AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUGGUACACUGCGAAAAACUCAAUUGACUUGCAAGAAUGAU
.(((((((....))))))).......(((((.(..(((...(((....))).((((((...)))))).............)))..).))))).... ( -25.80)
>DroEre_CAF1 39836 94 - 1
AUAAAGCAUCUUUGCCUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGUAGUGCACUGCGAGAAACCAGAUUAAAUUGCCAGAAUG--
.....(((....)))((.((.......(((......((((.(((....))).(((((.....)))))))))....))).......)).))....-- ( -19.94)
>DroYak_CAF1 38603 77 - 1
AUAAAGCAUCUUUGCUUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGAAGUACACUGCGAGAAA-----------------AGUA--
.(((((((....))))))).............(((.((((.(((....))).((((.......)))))))).)-----------------))..-- ( -21.00)
>DroPer_CAF1 53224 86 - 1
AUAAAGCAUCUUUGCCUUGGCU--GCUUCCUCCACUGCUCUGGCUUUCGCCAACCCAGCUAGGCAGAGGAAAG-------GAAGUGCAGAUAUAU-
.(((.(((....))).)))((.--(((((((((.((((.((((((...........)))))))))).)))..)-------)))))))........- ( -29.60)
>consensus
AUAAAGCAUCUUUGCCUUGCCUCGACUUCUUCCUUGUCUCCGGCUUUCGCCAGCAGAGGUACACUGCGAAAAA_______GAAUUGCAAGAAUAU_
.....(((....)))...........(((............(((....))).((((.......))))))).......................... ( -7.02 =  -7.80 +   0.78)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:00 2006