Locus 4547

Sequence ID 2R_DroMel_CAF1
Location 14,869,290 – 14,869,392
Length 102
Max. P 0.692991
window7290

overview

Window 0

Location 14,869,290 – 14,869,392
Length 102
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 91.91
Mean single sequence MFE -23.60
Consensus MFE -20.28
Energy contribution -20.53
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.62
Structure conservation index 0.86
SVM decision value 0.33
SVM RNA-class probability 0.692991
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14869290 102 + 20766785
AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG
.(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -24.60)
>DroSec_CAF1 41241 102 + 1
AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG
.(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -24.60)
>DroSim_CAF1 43394 102 + 1
AGCCAAAACAUUUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC--ACAUG
.(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......))))...)--))... ( -22.00)
>DroEre_CAF1 41719 100 + 1
AGCCAAACCAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCAC----AUACAUG
.((((((...((((((.((......)).....((((.......))))))))))...))))..)).......(((((.((....)).)..))))----....... ( -22.10)
>DroYak_CAF1 43102 104 + 1
AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACGCACACAUACG
.(((((((..((((((.((......)).....((((.......))))))))))..)))))..)).......(((....((((.......)))).)))....... ( -26.20)
>DroAna_CAF1 45367 95 + 1
AGCCAAAACAUCUGGCAGCCAAUUAGCGUAAUCCAGUUAGCUCCUGGGCCAAAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUGGAGCUACAC---------
.((((.......)))).((......))(((.(((((((.(((....))).......((((..((.......))..))))..)))))))..)))..--------- ( -22.10)
>consensus
AGCCAAAACAUCUGGCAGCCAAUUAGCCUAAUCCAGUUAGCUUCUGGGCCAGAAAUUUUGAAGCAAUUAUCGUGACAAGUGAACUAGACUCACACAC__ACAUG
.(((((((..((((((.((......)).....((((.......))))))))))..)))))..))..............((((.......))))........... (-20.28 = -20.53 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:46 2006