Locus 4545

Sequence ID 2R_DroMel_CAF1
Location 14,865,291 – 14,865,382
Length 91
Max. P 0.976162
window7287 window7288

overview

Window 7

Location 14,865,291 – 14,865,382
Length 91
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 90.23
Mean single sequence MFE -32.28
Consensus MFE -27.06
Energy contribution -26.75
Covariance contribution -0.31
Combinations/Pair 1.13
Mean z-score -2.60
Structure conservation index 0.84
SVM decision value 1.76
SVM RNA-class probability 0.976162
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14865291 91 + 20766785
UGGG--CAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGGAGCGAUGAAAAGCCGAAGCGAAGUCG-----GAAUGCCCUUG
.(((--(((((.((((........))))...)).((((((((...(((...((....))..)))...)))))))).......-----..))))))... ( -33.50)
>DroSec_CAF1 37261 93 + 1
UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCUGGAGCGAUAAAAAGCCGGAGCGAAGUCG-----GAAUGCCCUUG
.(((((..(((.((((........))))...)))((((((((.........((....))........)))))))).......-----....))))).. ( -28.63)
>DroSim_CAF1 39374 93 + 1
UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCUGGAGCGAUGAAAAGCCGAAGCGAAGUCG-----GAAUGCCCUUG
.(((((..(((.((((........))))...)))((((((((...(((...((....))..)))...)))))))).......-----....))))).. ( -32.50)
>DroYak_CAF1 39021 98 + 1
UGGGCAUAUGUGUCACCCGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGCAGCGAUGAAAAGCCAAAGCGACGUUGAACACGAAUGUCCUUG
.((((((.(((((((..((.....((.....)).((((((((...(((...((....))..)))...))))))))..)).)).))))).))))))... ( -34.50)
>consensus
UGGGGCCAUGUGUCACCGGGAAAAGUGAAAAACAGCUUUGGCGGGUCAACAGCAGGAGCGAUGAAAAGCCGAAGCGAAGUCG_____GAAUGCCCUUG
.(((....(((.((((........))))...)))((((((((...(((...((....))..)))...)))))))).................)))... (-27.06 = -26.75 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 14,865,291 – 14,865,382
Length 91
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 90.23
Mean single sequence MFE -25.42
Consensus MFE -18.99
Energy contribution -19.30
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.30
SVM RNA-class probability 0.678229
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14865291 91 - 20766785
CAAGGGCAUUC-----CGACUUCGCUUCGGCUUUUCAUCGCUCCUGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUG--CCCA
...((((((..-----.......((((.(((...(((..((....))...)))...))).))))......(((((......)))))...)))--))). ( -26.90)
>DroSec_CAF1 37261 93 - 1
CAAGGGCAUUC-----CGACUUCGCUCCGGCUUUUUAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA
...(((.....-----((((...(((..(((........)))..))).))))....((((....(((...(((((......))))).)))))))))). ( -21.90)
>DroSim_CAF1 39374 93 - 1
CAAGGGCAUUC-----CGACUUCGCUUCGGCUUUUCAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA
...((((....-----.......((((.(((...(((..((....))...)))...))).))))(((...(((((......))))).)))..)))).. ( -24.50)
>DroYak_CAF1 39021 98 - 1
CAAGGACAUUCGUGUUCAACGUCGCUUUGGCUUUUCAUCGCUGCUGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCGGGUGACACAUAUGCCCA
...((.(((..(((.........((((((((...(((..((....))...)))...))))))))......(((((......))))))))..))).)). ( -28.40)
>consensus
CAAGGGCAUUC_____CGACUUCGCUUCGGCUUUUCAUCGCUCCAGCUGUUGACCCGCCAAAGCUGUUUUUCACUUUUCCCGGUGACACAUGGCCCCA
...(((.................((((.(((...(((..((....))...)))...))).))))(((...(((((......))))).)))....))). (-18.99 = -19.30 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:44 2006