| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,844,119 – 14,844,209 |
| Length | 90 |
| Max. P | 0.902023 |
| Location | 14,844,119 – 14,844,209 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.23 |
| Mean single sequence MFE | -15.33 |
| Consensus MFE | -2.32 |
| Energy contribution | -2.64 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.15 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14844119 90 + 20766785 -UAUAUGGGUUUGCAGAGGUAAACACAAAUGGCUGUUUGCUAACUAAGUAAAAU----AUAUA--------CAAACUGGUA-CAUAUGAAACCAUGUGAAACUU -..(((.((((((....((((((((........))))))))......(((....----.))).--------)))))).)))-((((((....))))))...... ( -17.80) >DroSec_CAF1 16519 80 + 1 -UAUAUGGUUUUGCAGACAUAAACACAAAUGGCUCUUUGCUAACUAAAAACCAU----AUAUA--------CAAACUGGUUUUAUAU-----------AUCCUU -(((((((((((..((.(((........)))((.....))...)).))))))))----)))..--------................-----------...... ( -13.10) >DroSim_CAF1 16626 80 + 1 -UAUAUGGUUUUGCACACAUAAACACAAAUGGCUGUUUGCUAACUAAAAACCAU----AUAUA--------CAAACUGGUUUCAUAU-----------AUCCUU -(((((((((((.......((((((........)))))).......))))))))----)))..--------................-----------...... ( -13.74) >DroEre_CAF1 16587 84 + 1 -UAUAUGCGUUUGCAGACACAAACACAAAUGGCUCUUUGCUUUCCAAGCACCAUUUGCAUAUA--------CAAACUGCUUUCACCU-----------AACGUU -((((((((((((......)))))..((((((.....((((.....)))))))))))))))))--------................-----------...... ( -17.80) >DroYak_CAF1 16947 93 + 1 UUAUAUGGUUUUGCAGGCACAAACACUAAUGGCUCUUUGCUUUCUAAGCACCAUAUGUAUGUACAUAUAUUCAAACUGGUUUCACAU-----------AUAGUU (((((((((((.(.(((((......(....)......))))).).))))((((.((((((....))))))......))))....)))-----------)))).. ( -14.20) >consensus _UAUAUGGUUUUGCAGACAUAAACACAAAUGGCUCUUUGCUAACUAAGAACCAU____AUAUA________CAAACUGGUUUCAUAU___________AUCCUU .....((((...(((((......((....))....)))))..)))).......................................................... ( -2.32 = -2.64 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:36 2006