Locus 4533

Sequence ID 2R_DroMel_CAF1
Location 14,829,840 – 14,829,943
Length 103
Max. P 0.802641
window7269

overview

Window 9

Location 14,829,840 – 14,829,943
Length 103
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.21
Mean single sequence MFE -30.36
Consensus MFE -23.19
Energy contribution -25.11
Covariance contribution 1.92
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.76
SVM decision value 0.62
SVM RNA-class probability 0.802641
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14829840 103 + 20766785
GCUGCAUAAUAAUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUG----------------CACUAUGAAAAGCACUUGCCUUUUAUGCAAAUAGAUAGA-
..(((((((...((((((((.....)))))))).......((((.((.....)).))))(((((----------------(..........)))))).....)))))))..........- ( -22.40)
>DroSec_CAF1 2385 117 + 1
GCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGGGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAUAUAGAA
.(((....---.((((((((.....)))))))).................((((((.(((((((((.((((..(((....)))..(....))))).))))))))).))))))...))).. ( -30.50)
>DroSim_CAF1 2413 117 + 1
GCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAACCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGGGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAUAUAGAA
.(((....---.((((((((.....)))))))).................((((((.(((((((((.((((..(((....)))..(....))))).))))))))).))))))...))).. ( -30.50)
>DroEre_CAF1 2414 117 + 1
GCUGCAUA---AUGGGUGUUCCGAAAGCACCUAAGUCCAUUAAGGAAUCAAUUUGUUUUAAGUGCGUGUGCAUGUGAUCGCACUAUGCAAAGCACUUGCACUUUAUGCAAAUAGAUGGAU
..((((((---(((((((((.....))))))))..(((.....)))............(((((((...((((((((....))).)))))..)))))))....)))))))........... ( -35.80)
>DroYak_CAF1 2458 117 + 1
CCUGCAUA---AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUCAAGUGCGUGUGCAUGUGAUCGCACUAUGAGGAGUACCUGCACUUUAUGCAAAUAGGUAGAU
.((((...---.((((((((.....)))))))).................((((((...((((((..((((........))))....(((....)))))))))...))))))..)))).. ( -32.60)
>consensus
GCUGCAUA___AUGGGUGUUUCGAAAGCACCUAAGUCCAUUAGAGAAUCAAUUUGUUUAAAGUGCGUGUGCAUGUGAGCGCACUAUGAAAAGCACUUGCAUUUUAUGCAAAUAGAUAGAA
............((((((((.....)))))))).............(((.((((((.(((((((((.((((....................)))).))))))))).)))))).))).... (-23.19 = -25.11 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:27 2006