Locus 453

Sequence ID 2R_DroMel_CAF1
Location 2,598,137 – 2,598,255
Length 118
Max. P 0.627226
window866

overview

Window 6

Location 2,598,137 – 2,598,255
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 89.36
Mean single sequence MFE -46.48
Consensus MFE -34.24
Energy contribution -36.72
Covariance contribution 2.48
Combinations/Pair 1.03
Mean z-score -1.75
Structure conservation index 0.74
SVM decision value 0.19
SVM RNA-class probability 0.627226
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2598137 118 - 20766785
GGAACUCUGGAGCUCUGGAGCUCUGGAGCUCUGGAUCUCUGGGUCCCGACCCGUUUCUGCGAUCGGGGUUCUGCAGUCCGAGAGUUCGCGAUCGAGUUCUGCUCGCGUCGAGCUUGCU
.((((((((((((((..(....)..)))))))((((..(.(..((((((..(((....))).))))))..).)..)))).))))))).((((((((.....)))).))))........ ( -54.60)
>DroSec_CAF1 32325 110 - 1
GGAACUGUGGAGC--------UCUGGAGCUCUGGAUCUCUGGGUCCCGACCCGUUUCUGCGUUCGGGGUUCUGCAGUCCGAGAGUUCGCGAUCGAGUUCUGCUCGCGUCGAGCUUGCU
(((.(((..((((--------((((((((...(((....(((((....))))).))).)).))))))))))..))))))..(((((((((..((((.....)))))).)))))))... ( -49.30)
>DroSim_CAF1 31864 110 - 1
GGAACUGUGGAGC--------UGUGGAGCUCUUGAUCUCUGGGUCCCGACCCGUUUCUGCGAUCGGGGUUUUGCAGUCCGAGAGUUCGCGAUCGAGUUCUGCUCGCGUCGAGCUUGCU
.(((((.(.(..(--------((..((((.(((((((...((((....))))((....)))))))))))))..)))..).).))))).((((((((.....)))).))))........ ( -46.00)
>DroEre_CAF1 32308 117 - 1
GGAUCUGUGGAUCUCUGGAUCUCUGGAUCUCUGGAUCUCUGGGUCCCGACCCGUUUCUGCGAUCGG-GUUCUGCAGUCCGAGAGUUCGCGAUCGAGUUCUGCUCGCGUCGAGCUUGCU
(((.(((..((..((.((((((..(((((....)))))..)))))).))((((..........)))-).))..))))))..(((((((((..((((.....)))))).)))))))... ( -46.90)
>DroYak_CAF1 30752 109 - 1
GGAACUUU--------GGAUCACUGGAUCUCUGGAUCUCUGGGUCCCGACCCGUUUCUGCGAUCGG-CUUCUGCAGUCCGAGAGUUCGCGAUCGAGUUCUACUCGCGUCGAGCUUGCU
(((((((.--------(((((...(((((....)))))...))))).))...))))).((..((((-((.....)).))))(((((((((..((((.....)))))).))))))))). ( -35.60)
>consensus
GGAACUGUGGAGC___GGA_CUCUGGAGCUCUGGAUCUCUGGGUCCCGACCCGUUUCUGCGAUCGGGGUUCUGCAGUCCGAGAGUUCGCGAUCGAGUUCUGCUCGCGUCGAGCUUGCU
(((.(((((((((.........((((((........))))))..(((((..(((....))).)))))))))))))))))..(((((((((..((((.....)))))).)))))))... (-34.24 = -36.72 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:57 2006