Locus 4528

Sequence ID 2R_DroMel_CAF1
Location 14,820,723 – 14,820,843
Length 120
Max. P 0.988030
window7263

overview

Window 3

Location 14,820,723 – 14,820,843
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.83
Mean single sequence MFE -35.96
Consensus MFE -32.10
Energy contribution -32.50
Covariance contribution 0.40
Combinations/Pair 1.06
Mean z-score -1.82
Structure conservation index 0.89
SVM decision value 2.10
SVM RNA-class probability 0.988030
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14820723 120 - 20766785
UGACCUUGUCCUUCUUCUCGCCAGUCUUCGGGUCCACCUGCUCGGUCUGUGCGAAAACGGUCAUAAUUUCGGCAAUUCCGCCAUUGGAAAUCCAGAUUUUUGAGCCAUUAAGGACGUAGU
..((..(((((((....(((((((...((((((......)))))).))).))))....(((((.((..(((((......)))..(((....)))))..))))).))...)))))))..)) ( -36.20)
>DroSec_CAF1 22652 120 - 1
UCACCUUGUCCUUCUUUUCGCCAGUCUUCGGGUCCACCUGCUCAGUCUGUGCGAAAACGGUCAUGAUUUCGGCAAUUCCGCCAUUGGAAAUCCAAAUUUUCGAGCCAUUUAGGACGUAGU
..((..((((((..((((((((((.((.((((....))))...)).))).))))))).(((..(((....(((......))).((((....))))....))).)))....))))))..)) ( -36.90)
>DroSim_CAF1 16862 120 - 1
UCACCUUGUCCUUCUUUUCGCCAGUCUUCGGGUCCACCUGCUCAGUCUGUGCGAAAACGGUCAUGAUUUCGGCAAUUCCGCCAUUGGAAAUCCAGAUUUUCGAGCCAUUUAGGACGUAAU
.......(((((..((((((((((.((.((((....))))...)).))).))))))).(((..(((..(((((......)))..(((....)))))...))).)))....)))))..... ( -36.70)
>DroEre_CAF1 15512 120 - 1
UGACCUUGUCCUUCUUUUCGCCAGUCUUCGGGUCCACCUGCUCGGUCUGUGCGAAAACGGUCAUGAUUUCGGCGAUUCCGCCAUUGGAAAUCCAGAUUUUCGAGCCAUUUAGAACGAAGU
(((((..(.....)((((((((((...((((((......)))))).))).))))))).)))))..(((((((((....)))).((((((((....))))))))............))))) ( -35.60)
>DroYak_CAF1 16697 120 - 1
UGACCUUGUCCUUCUUUUCGCCAGUCUUCGGAUCCACCUGCUCGGUCUGUGCGAAAACGGUCAUGAUCUCGGCGAUUCCACCAUUGGAAAUCCAGAUUUUCGAGCCAUUUAGGACGUAGU
..((..((((((..((((((((((((....))...(((.....)))))).))))))).(((...(((((.((...(((((....)))))..))))))).....)))....))))))..)) ( -34.40)
>consensus
UGACCUUGUCCUUCUUUUCGCCAGUCUUCGGGUCCACCUGCUCGGUCUGUGCGAAAACGGUCAUGAUUUCGGCAAUUCCGCCAUUGGAAAUCCAGAUUUUCGAGCCAUUUAGGACGUAGU
......((((((..((((((((((.((.((((....))))...)).))).))))))).(((.........(((......))).((((((((....)))))))))))....)))))).... (-32.10 = -32.50 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:21 2006