| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,820,521 – 14,820,638 |
| Length | 117 |
| Max. P | 0.810085 |
| Location | 14,820,521 – 14,820,638 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 97.01 |
| Mean single sequence MFE | -41.76 |
| Consensus MFE | -39.40 |
| Energy contribution | -38.92 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.810085 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14820521 117 - 20766785 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCGGGGGUGCCGUACAGCAGUAUUCCCUUGAAGCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..(((((((((((..........)))))))))))..)))))..))))).........................((((((.((....)).)))))).... ( -43.50) >DroSec_CAF1 22450 117 - 1 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCUGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((.((((..((((((..........))))).)..)))))))))..))))).........................((((((.((....)).)))))).... ( -41.90) >DroSim_CAF1 16660 117 - 1 GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCGGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..(((((((((((..........)))))))))))..)))))..))))).........................((((((.((....)).)))))).... ( -43.50) >DroEre_CAF1 15310 117 - 1 GUACACUUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGUUCCGGGGUGCCGUACAGCAGUAUCCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ....(((.(((..(((((.((((((((((((..........)))).)))))))))))))..))))))........................((((((.((....)).)))))).... ( -38.90) >DroYak_CAF1 16495 117 - 1 GUACACUUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGUUCCGGGGUGCCGUACAGCAGUAUACCCUUGAAUCCAAUGCUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC (((.(((.(((..(((((.((((((((((((..........)))).)))))))))))))..)))))).)))....................((((((.((....)).)))))).... ( -41.00) >consensus GUACACCUGCUCGGCGGCCACCUUGGGCAGGUACUUCUCCUUCUGCUCCGGGGUGCCGUACAGCAGUAUUCCCUUGAAUCCAAUACUCUGAUGGGCGCCAAUCGUGAUGCCCAGUCC ......(((((..(((((..((..(((((((..........)))))))..))..)))))..))))).........................((((((.((....)).)))))).... (-39.40 = -38.92 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:22:20 2006