Locus 4515

Sequence ID 2R_DroMel_CAF1
Location 14,812,408 – 14,812,528
Length 120
Max. P 0.564000
window7234

overview

Window 4

Location 14,812,408 – 14,812,528
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.92
Mean single sequence MFE -21.18
Consensus MFE -18.89
Energy contribution -19.13
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.20
Structure conservation index 0.89
SVM decision value 0.06
SVM RNA-class probability 0.564000
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14812408 120 - 20766785
AAAAAAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAAUGGGAUAAGCAUUUAAUUGCUGUCCA
...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). ( -19.71)
>DroSec_CAF1 14243 120 - 1
GAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAACACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA
...........((.(((.((((((((((((.(((((....(((...........))))))))......))))))....((.....(((((...)))))....))..))))))..))))). ( -20.80)
>DroSim_CAF1 8511 120 - 1
AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGGCGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUAAAGUGGGAUAAGCAUUUAAUUGCUGUCCA
...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). ( -19.71)
>DroEre_CAF1 7100 120 - 1
AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUAGCUAAGGUGAAAGAGUUGAAGACGCAGCAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA
...........((.(((.((((((....(((((.(((....(....).((((......))))...............))).....(((((...)))))...)))))))))))..))))). ( -20.60)
>DroYak_CAF1 8404 120 - 1
AAAAGGAUGAAGGCACAAAAUUAAUGAUAUGCUGGCUAAGGUGAAAGAGUUGAAGACGCAGCAAAUUCAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA
....((((...((((....(((((....(((((.(((...(((((...((((......))))...))))).......))).....(((((...)))))...)))))))))))))))))). ( -25.10)
>consensus
AAAAGAAUCAAGGCACAAAAUUAAUGAUAUGCUUGCUAAGGUGAAAGAGUUGAAGACGCAGGAAAUUAAUAUUAAAAAGCGAAAACCCAUCAAGUGGGAUAAGCAUUUAAUUGCUGUCCA
...........((.(((.((((((....(((((((.....................(((...................)))....(((((...))))).)))))))))))))..))))). (-18.89 = -19.13 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:52 2006