Locus 4512

Sequence ID 2R_DroMel_CAF1
Location 14,810,976 – 14,811,096
Length 120
Max. P 0.938439
window7230

overview

Window 0

Location 14,810,976 – 14,811,096
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.06
Mean single sequence MFE -17.42
Consensus MFE -14.24
Energy contribution -13.92
Covariance contribution -0.32
Combinations/Pair 1.12
Mean z-score -1.88
Structure conservation index 0.82
SVM decision value 1.27
SVM RNA-class probability 0.938439
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14810976 120 - 20766785
CUAAGAGCAACAAAGACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAGCAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG
....((((.....((((......................(....)..(((((((.....)))))))...........)))).....(((((.......))))).))))............ ( -19.50)
>DroSec_CAF1 12775 119 - 1
CUAAGAGCAACAAAACCAUGAAAA-AAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG
....((((................-......................((((((.......))))))....................(((((.......))))).))))............ ( -15.50)
>DroSim_CAF1 7080 120 - 1
CUAAGAGCAACAAAAACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACUAUUGUUUAG
..............................(((((((.(((..((..((((((.......))))))....................(((((.......))))).))..))).))))))). ( -16.60)
>DroEre_CAF1 5698 114 - 1
CUGAGGGCAACAAAAACCUGAAAAA---AAUAUAUAAAAGUUCGCACUGUGUGCCAAAAACAC---AAAAUAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG
....((((.................---...................(((((.......))))---)...................(((((.......))))).))))............ ( -14.70)
>DroYak_CAF1 6907 116 - 1
CUAAGAGCAACAAAAACAUGAAAAA---AG-AACUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAACAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG
....((((.....((((........---.(-(((.....))))....((((((.......))))))...........)))).....(((((.......))))).))))............ ( -20.80)
>consensus
CUAAGAGCAACAAAAACAUGAAAAAAAAAAUAAAUAAAAGUUCGCACUGUGUGCCAAAAACAUACAAAAUAAAAAAAGUUUACAAAGUCAUUAAAAUUAUGGCAGCUCACGAUUGUUUAG
....((((...............................(((.((((...))))....))).........................(((((.......))))).))))............ (-14.24 = -13.92 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:48 2006