Locus 4510

Sequence ID 2R_DroMel_CAF1
Location 14,809,589 – 14,809,698
Length 109
Max. P 0.694577
window7225

overview

Window 5

Location 14,809,589 – 14,809,698
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 86.64
Mean single sequence MFE -34.04
Consensus MFE -27.10
Energy contribution -27.70
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.64
Structure conservation index 0.80
SVM decision value 0.34
SVM RNA-class probability 0.694577
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14809589 109 - 20766785
CCAAAUCCAACCAGGUGUGCUGCGGUUG-----------CCCACGUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACAUACAUAUGUACACACACAUAUACUAUAUAUUUUCCU
...........(((((((((.(((((.(-----------(....)).))))))).)))))))((((((((......))))))))...((((((......))))))............... ( -26.10)
>DroSec_CAF1 11426 116 - 1
CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCUCCUUAUCGCGCGACAUUUGUGUCUCCUCGCAACAGGGGACA----UAUGUACACACACAUAUACUAUAUAUUUUCCU
...........(((((((((.(((((.((.(((((....))))))).))))))).))))))).(((((((......)))))))(----(((((......))))))............... ( -39.40)
>DroSim_CAF1 5711 116 - 1
CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCCUCGCAACAGGGGACA----UAUGUACACACACAUAUACCAUAUAUUUUCCU
...........(((((((((.(((((.((.(((......))).))..))))))).))))))).(((((((......)))))))(----(((((......))))))............... ( -36.30)
>DroEre_CAF1 4242 115 - 1
CCAAAUCCAACCAGGUGUGCUGCGGUUGGUGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA----UAUGUACAUACAUAUG-AAUAUAUAUUUUUCU
...........(((((((((.(((((.((((((......))))))..))))))).))))))).(((((((......)))))))(----(((((.(((....)))-.))))))........ ( -37.70)
>DroYak_CAF1 5480 103 - 1
CCAAAUCCAACCAGGUGUGUUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA----UAUGUACAU-------------AUAUUUUCCU
............(((.(((((((((.(((.(((((....))).))))).).)))))))).((((((((((......))))))))----)).......-------------.......))) ( -30.70)
>consensus
CCAAAUCCAACCAGGUGUGCUGCGGUUGGCGGGGGGAAGCCCACCUUAUCGCGCGACAUUUGUGUCUCUUCGCAACAGGGGACA____UAUGUACACACACAUAUACUAUAUAUUUUCCU
...........(((((((((.(((((.((.(((......))).))..))))))).)))))))((((((((......)))))))).................................... (-27.10 = -27.70 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:43 2006