| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,809,277 – 14,809,391 |
| Length | 114 |
| Max. P | 0.797701 |
| Location | 14,809,277 – 14,809,391 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.79 |
| Mean single sequence MFE | -24.91 |
| Consensus MFE | -11.29 |
| Energy contribution | -13.62 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14809277 114 - 20766785 GUCUAUAC----GUAUUAAUC--UAUUAUGUCAGAAGAGCGUUUCAGCUCUGUCAUAUCAGCAUGACAUUCAAAAAAGCUGUACUCUGUGCAUGGAGUAAGGCAGUUAUUAAUGCGUGGA .....(((----((((((((.--..........(((((((......))))((((((......)))))))))......(((.((((((......)))))).)))....))))))))))).. ( -33.60) >DroSec_CAF1 11111 118 - 1 GUCUAUACAUAUGUAUUAAUC--UAUUAUGUCAGAAGAGCGGUUUAACUCUGUCAUAUCAGCAUGACUUUCAAAAAAGCUGUACUCUGUACAUGGAGUAAGGCAGUUAAUAAUGCGUAUA ........((((((((((.((--(........)))........((((((..(((((......)))))..........(((.((((((......)))))).))))))))))))))))))). ( -26.30) >DroSim_CAF1 5399 114 - 1 GUCUAUAC----GUAUUAAUC--UAUUAUGUCAGAAGAGCGGUUUAACUCUGUCAUAUCAGCAUGACUUUCAAAAAAGCUGUACUCUGUACAUGGAAAAAGGCAGUUAAUAAUGCGUAUA ...(((((----((((((...--...(((((((((.(.(((((((......(((((......)))))........))))))).))))).)))))(.......)......))))))))))) ( -25.94) >DroEre_CAF1 3974 89 - 1 ----AUAU----GUAUUAAUA--UAUUAUGUC--------AUUUAAACUCUGUCAUAUC---AUGACAUUCAAAAAAGCUGC-----CU-----AAGUAAGGCAGUUUAUAUUGCUUAUA ----...(----(((.(((((--(........--------..........((((((...---)))))).......(((((((-----((-----.....)))))))))))))))..)))) ( -18.20) >DroYak_CAF1 5169 111 - 1 ----AUAU----GUAAUCUUAGCUAUUAUGUCAGAAGAGCAUUUUAACUCUGAUAUAUCAGCAUGACAAUCAAAAAAGCUGUACUC-AUAAAUAAAGUCAGGUAGGUAAUAAUGCGUAUA ----((((----(((......(((..(((((((((.............)))))))))..)))................(((.(((.-........))))))...........))))))). ( -20.52) >consensus GUCUAUAC____GUAUUAAUC__UAUUAUGUCAGAAGAGCGUUUUAACUCUGUCAUAUCAGCAUGACAUUCAAAAAAGCUGUACUCUGUACAUGGAGUAAGGCAGUUAAUAAUGCGUAUA ......................................(((..((((((..(((((......)))))..........(((.((((((......)))))).)))))))))...)))..... (-11.29 = -13.62 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:42 2006