Locus 4504

Sequence ID 2R_DroMel_CAF1
Location 14,798,457 – 14,798,562
Length 105
Max. P 0.613869
window7210

overview

Window 0

Location 14,798,457 – 14,798,562
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -40.47
Consensus MFE -28.04
Energy contribution -27.60
Covariance contribution -0.44
Combinations/Pair 1.30
Mean z-score -1.40
Structure conservation index 0.69
SVM decision value 0.16
SVM RNA-class probability 0.613869
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14798457 105 - 20766785
GGAUGAGAACCACGUAGGCGCCGAGCGGGAAGCGGAGGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCAUCGGCGCUUUUGGAUCUGCGCUCCAA
((((((((.(((...(((((((((((((...((((.(((.......)))..)))).))))))..((((((.....))))))))))))).))).))).)).))).. ( -48.00)
>DroSec_CAF1 10919 105 - 1
GGAACAGAAUCAUGUAGGGACCGAGCGGGAGGCGGAAGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCGUCGGCGCUGUUGGAUCUGCGCUCCAA
...(((......)))............(((((((((..((((((.((((....((((((....))))))(((....)))..)))).)))))).))))).)))).. ( -42.10)
>DroSim_CAF1 15863 105 - 1
GGAACAGAAUCAUGUAGGGACCGAGCGGGAGGCGGAGGCCAACGAUGCCAACUGCACCGUUUGUGGUGCCGCCAAGGCGUCGGCGCUGUUGGAUCUGCGCUCCAA
...(((......)))............(((((((((..((((((.((((....((((((....))))))(((....)))..)))).)))))).))))).)))).. ( -43.30)
>DroEre_CAF1 1824 99 - 1
GGUACAGAAUCAUG------CCGAGCGGGAGGCGGAAGCCAACGAUGCCAAUUGCACCAUAUGUGGUGCCGCGAAGGCCUCGGCUCUCUUAGAUCUGCGCUCCAA
((((........))------))(((((((((((....)))...((.(((....((((((....)))))).((....))...))))).......))).)))))... ( -39.00)
>DroYak_CAF1 16690 105 - 1
GGUACAGAAUCAUGCAGCUGCCGAGCGGGAGGCGGAAGCCAACGAUGCCAAUUGCACCAUAUGUGGUGCCGCAAAGGCCUCGGCUCUCUUGGAUCUGCGCUCCAA
.............((((...(((((.(((.(((....)))..(((.(((....((((((....))))))......))).))).))).)))))..))))....... ( -41.50)
>DroAna_CAF1 1895 102 - 1
CGAAAAGGUGGAUGU---CUCUGGACGGGAAGCGGAAGCCCAUGAAGUUAACUGCACUAUUUGCGGAGCUAAGAAAGCAUCGGCACUUCUGGACCUGCGUUCCAA
........((((.((---(....)))(((..((....))(((.(((((...(((((.....))))).(((.....)))......)))))))).)))....)))). ( -28.90)
>consensus
GGAACAGAAUCAUGUAGGCACCGAGCGGGAGGCGGAAGCCAACGAUGCCAACUGCACCAUUUGUGGUGCCGCCAAGGCAUCGGCGCUCUUGGAUCUGCGCUCCAA
......................(((((((((((....)))..(((.(((....((((((....))))))......))).)))...........))).)))))... (-28.04 = -27.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:21:29 2006